HHsearch results for GI: 254781108 and protein with PDBid: 2nvo_A
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.18 E-value=4.7e-05 Score=47.39 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=56.3
Q ss_pred EEEEEECCCCCCCCCCCCCCC--CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 346541267765431123568--999999997357788874458899999996113466666566766665169981588
Q gi|254781108|r 237 RIGTIAYNIGIVGNQCTPLSN--NLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDG 314 (398)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~lt~--~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG 314 (398)
+...+.|++.... .+++. ........+..+ ++|+|+++.+|.|+.+.-. ....||++|||
T Consensus 405 ~~~vv~Fs~~~~~---v~l~~~~sl~~~~~~~~~~-~~ggT~~~~~l~~a~~~~~--------------~~D~iIllTD~ 466 (535)
T 2nvo_A 405 DALTMGFAEQFRP---LGITPRDTLESAMQKAQSV-SFGGTDCAQPILWAAQERL--------------DVDTFVVYTDN 466 (535)
T ss_dssp EEEEEEEBSSEEE---CCCCTTCCHHHHHHHTCCS-SBCCCCTTHHHHHHHHTTC--------------CCSEEEEEESS
T ss_pred CEEEEEECCCEEE---ECCCCCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHCCC--------------CCCEEEEEECC
T ss_conf 8079842796587---1788886499999998615-7899669999999985654--------------58989998089
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 778777776631489999999978988999995479
Q gi|254781108|r 315 ENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP 350 (398)
Q Consensus 315 ~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~ 350 (398)
+++.+.... ........+..+.+.++++|++...
T Consensus 467 e~~~g~~~p--~~al~~yr~~~~~~~klv~v~l~~~ 500 (535)
T 2nvo_A 467 ETWAGQVHP--TVALDQYAQKMGRAPKLIVVGLTAT 500 (535)
T ss_dssp CCCCCSSCH--HHHHHHHHHHHSCCCEEEEEETTCS
T ss_pred CCCCCCCCH--HHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 977899999--9999999997189971899980378