HHsearch results for GI: 254781108 and protein with PDBid: 3k6s_B
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.71 E-value=0.00018 Score=43.92 Aligned_cols=131 Identities=14% Similarity=0.177 Sum_probs=70.8
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC------------
Q ss_conf 3112356899999999735778887445889-999999611346666656676666516998158877------------
Q gi|254781108|r 250 NQCTPLSNNLNEVKSRLNKLNPYENTNTYPA-MHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN------------ 316 (398)
Q Consensus 250 ~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~g-l~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~------------ 316 (398)
...++||.+...+..+|++...+|+-...+| |.-.++.+.-...-.|+ + .+|++||.||...
T Consensus 183 ~~~~~lt~~~~~f~~~~~~~~~~~n~d~pe~~~da~~q~~~c~~~igwr--~---~~~~~~~~td~~~h~agdg~l~gi~ 257 (687)
T 3k6s_B 183 RHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWR--N---VTRLLVFATDDGFHFAGDGKLGAIL 257 (687)
T ss_dssp EEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCC--S---SCCEEEEECSSCCCCTTGGGGGTCC
T ss_pred EEECCCCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCCCC--C---CEEEEEEECCCCCCCCCCCCCCEEC
T ss_conf 5422566778999998751670357768650166888877502223645--7---5489999816874426764231040
Q ss_pred --CCCC-------CCC---CCH-HHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHHHC-CCCCEE--EECCHHHHHHH
Q ss_conf --8777-------776---631-489999999978988-999995479755899999851-998189--94698999999
Q gi|254781108|r 317 --SGAS-------AYQ---NTL-NTLQICEYMRNAGMK-IYSVAVSAPPEGQDLLRKCTD-SSGQFF--AVNDSRELLES 379 (398)
Q Consensus 317 --~~~~-------~~~---~~~-~~~~~c~~~K~~gi~-IytIg~~~~~~~~~~l~~cAs-~~~~yy--~a~~~~~L~~a 379 (398)
|.+. |.. ..+ ....+-.++++++|. ||.|.= ....+.+..+. =|+... -+.+++.|.+.
T Consensus 258 ~pnd~~chl~~~~y~~~~~~dyps~~~~~~~~~~~~i~~ifavt~----~~~~~y~~l~~~~~~~~~~~l~~ds~ni~~l 333 (687)
T 3k6s_B 258 TPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTS----RMVKTYEKLTEIIPKSAVGELSEDSSNVVQL 333 (687)
T ss_dssp CCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECG----GGHHHHHHHHHHSSSCCEEECCTTCCSCGGG
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHCCCCEEEEECCCCHHHHHH
T ss_conf 478873170488303566667789899999998649259999766----4443689999755775047614664779999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998751
Q gi|254781108|r 380 FDKITDKIQE 389 (398)
Q Consensus 380 F~~I~~~i~~ 389 (398)
+++-.++|.+
T Consensus 334 i~~~y~~i~s 343 (687)
T 3k6s_B 334 IKNAYNKLSS 343 (687)
T ss_dssp TTTHHHHHSS
T ss_pred HHHHHHHHHC
T ss_conf 9999986513