HHSEARCH alignment of GI: 254781108 and SCOP domain: d1jeyb2

Alignment

Probab=99.10  E-value=1.9e-09  Score=72.38  Aligned_cols=147  Identities=10%  Similarity=0.005  Sum_probs=94.1

Q ss_pred             CCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             31357505566666676663101233102301268876540310134322011255533341000245665541022027
Q gi|254781108|r  149 SICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAI  228 (398)
Q Consensus       149 di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  228 (398)
                      .+++++|+|+||......                                       ..++++..+.++..++.......
T Consensus         4 aiv~~lD~S~SM~~~~~~---------------------------------------~~srl~~ak~~~~~~v~~~~~~~   44 (236)
T d1jeyb2           4 AVVLCMDVGFTMSNSIPG---------------------------------------IESPFEQAKKVITMFVQRQVFAE   44 (236)
T ss_dssp             EEEEEEECCGGGGCCBTT---------------------------------------BCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEECCHHHCCCCCC---------------------------------------CCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             199999898443657789---------------------------------------99989999999999999984289


Q ss_pred             CCCCCCCEEEEEEECCCCCCCC------------CCCCCCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             6877652134654126776543------------11235689999999973577--888744588999999961134666
Q gi|254781108|r  229 QEKKNLSVRIGTIAYNIGIVGN------------QCTPLSNNLNEVKSRLNKLN--PYENTNTYPAMHHAYRELYNEKES  294 (398)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~lt~~~~~~~~~I~~l~--~~G~T~~~~gl~~a~~~l~~~~~~  294 (398)
                           ...+.+.+.|.......            ...++..........+..+.  .++.|+...++..+...+......
T Consensus        45 -----~~d~vglV~f~~~~t~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a~~~~~~~~~~  119 (236)
T d1jeyb2          45 -----NKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIG  119 (236)
T ss_dssp             -----CCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSS
T ss_pred             -----CCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             -----997599999737776566565566304799741322015677777653024655555047889999887776404


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             66566766665169981588778777776631489999999978988999995479
Q gi|254781108|r  295 SHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP  350 (398)
Q Consensus       295 ~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~  350 (398)
                            .+..+|.|||+|||+++...     .....+++.+|+.||+||+||++..
T Consensus       120 ------~~~~~r~IiL~TDG~~~~~~-----~~~~~~a~~l~~~~I~i~~ig~g~~  164 (236)
T d1jeyb2         120 ------KKFEKRHIEIFTDLSSRFSK-----SQLDIIIHSLKKCDISLQFFLPFSL  164 (236)
T ss_dssp             ------SCCSEEEEEEECCCCSCCCC-----TTHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             ------CCCCCCEEEEEECCCCCCCH-----HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             ------66565179999369987683-----7899999999875988999944776

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku80 subunit N-terminal domain
domain: Ku80 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]