HHSEARCH alignment of GI: 254781108 and SCOP domain: d1mf7a_

Alignment
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.68  E-value=1.2e-16  Score=115.60  Aligned_cols=180  Identities=18%  Similarity=0.248  Sum_probs=129.3

Q ss_pred             CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r  146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ  225 (398)
Q Consensus       146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  225 (398)
                      .++|+++++|.|+||...                                             +....+..+..+++.+.
T Consensus         4 ~~~DivfvlD~S~s~~~~---------------------------------------------~~~~~k~f~~~iv~~l~   38 (194)
T d1mf7a_           4 EDSDIAFLIDGSGSIIPH---------------------------------------------DFRRMKEFVSTVMEQLK   38 (194)
T ss_dssp             CCEEEEEEEECCTTSCHH---------------------------------------------HHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHCC
T ss_conf             871699999798998879---------------------------------------------99999999999999718


Q ss_pred             HCCCCCCCCCEEEEEEECCCCCCCCCCCCCC--CCHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             0276877652134654126776543112356--899999999735778-8874458899999996113466666566766
Q gi|254781108|r  226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLS--NNLNEVKSRLNKLNP-YENTNTYPAMHHAYRELYNEKESSHNTIGST  302 (398)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~~I~~l~~-~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~  302 (398)
                      .       ..++.+.+.|.......  .+|.  .+..+++++|+.+.+ +|+|++..++.++.+.+.......     .+
T Consensus        39 ~-------~~~rv~vv~fs~~~~~~--~~l~~~~~~~~~~~~i~~i~~~~~~t~~~~al~~~~~~~~~~~~~~-----~~  104 (194)
T d1mf7a_          39 K-------SKTLFSLMQYSEEFRIH--FTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITNGA-----RK  104 (194)
T ss_dssp             C-------TTEEEEEEEESSSEEEE--ECHHHHHHSCCHHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTC-----CT
T ss_pred             C-------CCCEEEEEEEECCCEEE--EECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-----CC
T ss_conf             6-------78369999972240257--7526657789999997645553210157799999999987564257-----88


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC---CCHHHHHHHHHCCC--CCEEEECCHHHHH
Q ss_conf             665169981588778777776631489999999978988999995479---75589999985199--8189946989999
Q gi|254781108|r  303 RLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP---PEGQDLLRKCTDSS--GQFFAVNDSRELL  377 (398)
Q Consensus       303 ~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~---~~~~~~l~~cAs~~--~~yy~a~~~~~L~  377 (398)
                      ..+|++||+|||..+...     .....+...+|..||+||+||++..   ......|+.+|+.|  .++|.+++.++|.
T Consensus       105 ~~~kvvvliTDG~~~~~~-----~~~~~~~~~~~~~gv~i~~VGi~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~  179 (194)
T d1mf7a_         105 NAFKILVVITDGEKFGDP-----LGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALK  179 (194)
T ss_dssp             TSEEEEEEEESSCCBSCS-----SCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGG
T ss_pred             CCCEEEEEEECCCCCCCC-----HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHH
T ss_conf             973599998268989980-----559999999998599059980577666525699999996599877199959999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999998751
Q gi|254781108|r  378 ESFDKITDKIQE  389 (398)
Q Consensus       378 ~aF~~I~~~i~~  389 (398)
                      +.+++|.++|.-
T Consensus       180 ~~~~~l~~~i~c  191 (194)
T d1mf7a_         180 TIQNQLREKIFC  191 (194)
T ss_dssp             GGHHHHHHHHHT
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999887626


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit)
species: Human (Homo sapiens) [TaxId: 9606]