HHSEARCH alignment of GI: 254781108 and SCOP domain: d1mjna_

Alignment
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.61  E-value=3.3e-16  Score=112.92  Aligned_cols=171  Identities=16%  Similarity=0.232  Sum_probs=121.9

Q ss_pred             CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r  146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ  225 (398)
Q Consensus       146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  225 (398)
                      +++|+++++|.|+||....                                             ....+..+..++..+.
T Consensus         1 g~~DivfllD~S~Si~~~~---------------------------------------------f~~~k~f~~~~i~~i~   35 (179)
T d1mjna_           1 GNVDLVFLFDGSMSLQPDE---------------------------------------------FQKILDFMKDVMKKCS   35 (179)
T ss_dssp             CCEEEEEEEECBTTCCHHH---------------------------------------------HHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHHHC
T ss_conf             9768999997989989899---------------------------------------------9999999999999828


Q ss_pred             HCCCCCCCCCEEEEEEECCCCCCCCCCCCCC--CCHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             0276877652134654126776543112356--899999999735778-8874458899999996113466666566766
Q gi|254781108|r  226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLS--NNLNEVKSRLNKLNP-YENTNTYPAMHHAYRELYNEKESSHNTIGST  302 (398)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~~I~~l~~-~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~  302 (398)
                             ...+|.+.+.|.......  .+|+  .+...+..+|+.+.. +|+|++..+|.++.+.++....+..     +
T Consensus        36 -------~~~~rvgvv~fs~~~~~~--~~l~~~~~~~~~~~~i~~i~~~~g~t~~~~AL~~~~~~~f~~~~g~R-----~  101 (179)
T d1mjna_          36 -------NTSYQFAAVQFSTSYKTE--FDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGAR-----P  101 (179)
T ss_dssp             -------TSSEEEEEEEESSSEEEE--ECHHHHHHHCCHHHHHTTCCCCCBCCCHHHHHHHHHHHTSSGGGTCC-----T
T ss_pred             -------CCCEEEEEEEEEEEEEEE--ECHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHCCCC-----C
T ss_conf             -------775289999974234688--51143063688999986331015863499999999998716101889-----9


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHCCC--CCEEEECCHHHHH
Q ss_conf             66516998158877877777663148999999997898899999547975---589999985199--8189946989999
Q gi|254781108|r  303 RLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPE---GQDLLRKCTDSS--GQFFAVNDSRELL  377 (398)
Q Consensus       303 ~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~---~~~~l~~cAs~~--~~yy~a~~~~~L~  377 (398)
                      +..|++||||||..+...            ...+.+|+.+|+||++....   ....|+.+|+.|  .|+|.+++.++|.
T Consensus       102 ~~~kvvvllTDG~s~d~~------------~~~~~~~i~~~~igvg~~~~~~~~~~~L~~ias~p~~~~~~~~~~~~~L~  169 (179)
T d1mjna_         102 DATKVLIIITDGEATDSG------------NIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLK  169 (179)
T ss_dssp             TSEEEEEEEESSCCSSCS------------CCGGGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSC
T ss_pred             CCCEEEEEEECCCCCCCC------------HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHH
T ss_conf             997499999789986540------------69997417440698524456400499999985799622399749999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999987
Q gi|254781108|r  378 ESFDKITDKI  387 (398)
Q Consensus       378 ~aF~~I~~~i  387 (398)
                      +.+++|.++|
T Consensus       170 ~i~~~l~~~I  179 (179)
T d1mjna_         170 DLCTELQKKI  179 (179)
T ss_dssp             CHHHHHHHHC
T ss_pred             HHHHHHHHHC
T ss_conf             9999998439


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1)
species: Human (Homo sapiens) [TaxId: 9606]