HHSEARCH alignment of GI: 254781108 and SCOP domain: d1pt6a_

Alignment
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77  E-value=1.5e-17  Score=120.86  Aligned_cols=178  Identities=18%  Similarity=0.270  Sum_probs=128.9

Q ss_pred             CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r  148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA  227 (398)
Q Consensus       148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  227 (398)
                      +|+++|+|.|+||..   +                                            +..+..+..++..+.- 
T Consensus         2 ~DivfvlD~S~S~~~---~--------------------------------------------~~~k~f~~~~i~~~~i-   33 (192)
T d1pt6a_           2 LDIVIVLDGSNSIYP---W--------------------------------------------DSVTAFLNDLLKRMDI-   33 (192)
T ss_dssp             EEEEEEEECCTTCCC---H--------------------------------------------HHHHHHHHHHHTTSCB-
T ss_pred             EEEEEEEECCCCCCC---H--------------------------------------------HHHHHHHHHHHHHHCC-
T ss_conf             489999979888777---9--------------------------------------------9999999999998254-


Q ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             7687765213465412677654311235689999999973577888--74458899999996113466666566766665
Q gi|254781108|r  228 IQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE--NTNTYPAMHHAYRELYNEKESSHNTIGSTRLK  305 (398)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G--~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~  305 (398)
                          .....|.+.+.|+.............+...+..+|+.+.+.|  +++.+.++.++...++....+.+     ++.+
T Consensus        34 ----~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~~~~~~al~~~~~~~~~~~~g~R-----~~~~  104 (192)
T d1pt6a_          34 ----GPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGAR-----RGVK  104 (192)
T ss_dssp             ----STTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGGTCC-----TTCE
T ss_pred             ----CCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC-----CCCC
T ss_conf             ----8887379999984127899727764046899998865554422110157898777776301235898-----8861


Q ss_pred             EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEECCHHH
Q ss_conf             16998158877877777663148999999997898899999547975--------589999985199--81899469899
Q gi|254781108|r  306 KFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPE--------GQDLLRKCTDSS--GQFFAVNDSRE  375 (398)
Q Consensus       306 k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~--------~~~~l~~cAs~~--~~yy~a~~~~~  375 (398)
                      |++||+|||..+      +.......++.+|+.||+||+||+|...+        ..+.|+.+|+.|  .|+|.+++..+
T Consensus       105 kviillTDG~~~------d~~~~~~~a~~lk~~gi~v~~igvg~~~~~~~~~~~~~~~~L~~IAs~p~~~~~f~v~d~~~  178 (192)
T d1pt6a_         105 KVMVIVTDGESH------DNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA  178 (192)
T ss_dssp             EEEEEEESSCCS------CSHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred             EEEEEEECCCCC------CCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHH
T ss_conf             589999668877------63026999999997799699999705555454343136999999866998550898389999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999875
Q gi|254781108|r  376 LLESFDKITDKIQ  388 (398)
Q Consensus       376 L~~aF~~I~~~i~  388 (398)
                      |.+++++|.++|-
T Consensus       179 L~~i~~~i~~~I~  191 (192)
T d1pt6a_         179 LVTIVKTLGERIF  191 (192)
T ss_dssp             GGGGHHHHHHHHT
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999988852


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha1-beta1
species: Human (Homo sapiens) [TaxId: 9606]