RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781108|ref|YP_003065521.1| von Willebrand factor type A
[Candidatus Liberibacter asiaticus str. psy62]
         (398 letters)



>gnl|CDD|128622 smart00327, VWA, von Willebrand factor (vWF) type A domain.  VWA
           domains in extracellular eukaryotic proteins mediate
           adhesion via metal ion-dependent adhesion sites (MIDAS).
           Intracellular VWA domains and homologues in prokaryotes
           have recently been identified. The proposed VWA domains
           in integrin beta subunits have recently been
           substantiated using sequence-based methods.
          Length = 177

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 21/178 (11%)

Query: 206 ANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSR 265
              + +   E    LV  +     +      R+G + ++           S + + +   
Sbjct: 15  GPNRFEKAKEFVLKLVEQL-----DIGPDGDRVGLVTFSDDATVLFPLNDSRSKDALLEA 69

Query: 266 LNKLNPY--ENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQ 323
           L  L+      TN   A+ +A   L+++   S          K +I ITDGE++      
Sbjct: 70  LASLSYKLGGGTNLGAALQYALENLFSKSAGSRRGA-----PKVLILITDGESNDGGDLL 124

Query: 324 NTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRK--CTDSSGQFFAVNDSRELLES 379
                L      + +G+K++ V V    + ++ L+K          F       L++ 
Sbjct: 125 KAAKEL------KRSGVKVFVVGVGNDVD-EEELKKLASAPGGVYVFLPELFDLLIDL 175


>gnl|CDD|149078 pfam07811, TadE, TadE-like protein.  The members of this family
          are similar to a region of the protein product of the
          bacterial tadE locus. In various bacterial species, the
          tad locus is closely linked to flp-like genes, which
          encode proteins required for the production of pili
          involved in adherence to surfaces. It is thought that
          the tad loci encode proteins that act to assemble or
          export an Flp pilus in various bacteria. All tad loci
          but TadA have putative transmembrane regions, and in
          fact the region in question is this family has a high
          proportion of hydrophobic amino acid residues.
          Length = 43

 Score = 32.7 bits (76), Expect = 0.15
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 2  TAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAV 37
           A+++ V  L +   ++L  + Y R  +Q+A   A 
Sbjct: 7  FALVLPVLLLLLFGIVELGRLFYARQVLQNAAREAA 42


>gnl|CDD|179783 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed.
          Length = 215

 Score = 31.0 bits (71), Expect = 0.58
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 20/75 (26%)

Query: 201 PAPAPANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGT-------IAYNIGIVGNQCT 253
           P P P N  I  L+E    L N+++   +++    VR+GT       +A NI  V     
Sbjct: 132 PTPLPPNADIKPLVE---RLKNTVRIRTKDQPTFHVRVGTEDMSPEELAENIDAV----- 183

Query: 254 PLSNNLNEVKSRLNK 268
                LN ++S+L K
Sbjct: 184 -----LNRIESKLEK 193


>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
           Members of this protein family are the FliI protein of
           bacterial flagellum systems. This protein acts to drive
           protein export for flagellar biosynthesis. The most
           closely related family is the YscN family of bacterial
           type III secretion systems. This model represents one
           (of three) segment of the FliI family tree. These have
           been modeled separately in order to exclude the type III
           secretion ATPases more effectively.
          Length = 418

 Score = 30.0 bits (68), Expect = 1.3
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 298 TIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAG 339
            +G   LK+ V+ +   + S     Q       I EY R+ G
Sbjct: 188 DLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQG 229


>gnl|CDD|181279 PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate
           acetyltransferase; Validated.
          Length = 466

 Score = 29.5 bits (67), Expect = 1.7
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 14/38 (36%)

Query: 16  AIDLAHIM--------------YIRNQMQSALDAAVLS 39
           AIDLAH +               +  +M S LDAA L 
Sbjct: 319 AIDLAHALGVEEPKVAILSAVETVNPKMPSTLDAAALC 356


>gnl|CDD|178687 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
           chain; Provisional.
          Length = 1033

 Score = 27.1 bits (60), Expect = 8.0
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 230 EKKNLS--VRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNP 271
           E   LS  +R+ +  Y + I G   TPL NNL+E+ + LN L P
Sbjct: 306 ENSLLSKTMRLFSTNYRLLITG---TPLQNNLHELWALLNFLLP 346


>gnl|CDD|162203 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase.
           Built to distinquish between the highly similar genes
           galU and galF.
          Length = 260

 Score = 27.3 bits (61), Expect = 8.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 17  IDLAHIMYIRNQMQSALDAAVLSG 40
             LA I Y+R + Q  L  AVL  
Sbjct: 90  SPLATIFYVRQKEQKGLGHAVLCA 113


>gnl|CDD|148693 pfam07236, Phytoreo_S7, Phytoreovirus S7 protein.  This family
           consists of several Phytoreovirus S7 proteins which are
           thought to be viral core proteins.
          Length = 506

 Score = 27.1 bits (60), Expect = 9.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 55  TKKDQTSTIFKKQIKKHLKQGSY 77
           T+ D+   +F K + KH+  G Y
Sbjct: 306 TESDKWEEMFNKCVCKHIIAGDY 328


>gnl|CDD|161817 TIGR00321, dhys, deoxyhypusine synthase.  This family of apparent
           orthologs has an unusual UPGMA difference tree, in which
           the members from the archaea M. jannaschii and P.
           horikoshii cluster with the known eukaryotic
           deoxyhypusine synthases. Separated by a fairly deep
           branch, although still strongly related, is a small
           cluster of proteins from Methanobacterium
           thermoautotrophicum and Archeoglobus fulgidus, the
           latter of which has two.
          Length = 301

 Score = 27.0 bits (60), Expect = 9.1
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 207 NRKIDVLIESAGNLVNSIQKAI 228
           +  ID L+ +  NL + + +A+
Sbjct: 71  HGMIDALVTTGANLEHDLIEAL 92


>gnl|CDD|151809 pfam11369, DUF3160, Protein of unknown function (DUF3160).  This
           family of proteins has no known function.
          Length = 637

 Score = 27.0 bits (60), Expect = 9.5
 Identities = 10/51 (19%), Positives = 16/51 (31%)

Query: 312 TDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD 362
             G +   +++ N        E  +    KIY   +    E  D   K T 
Sbjct: 262 VFGGDRKPASFDNETLAELKAELAKYESPKIYGGTIPFTSEQADECLKDTK 312


>gnl|CDD|184711 PRK14499, PRK14499, molybdenum cofactor biosynthesis protein
           MoaC/MOSC-domain-containing protein; Provisional.
          Length = 308

 Score = 26.7 bits (59), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 73  KQGSYIRENAGDIAQKAQINITKDKNNPLQYIAES 107
           K G YI E     A+   INI++ K  P + + E+
Sbjct: 150 KSGHYIFERRNKTAKVVSINISRQKGTPKEPVEEA 184


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.314    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,053,282
Number of extensions: 367526
Number of successful extensions: 588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 27
Length of query: 398
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 303
Effective length of database: 3,941,713
Effective search space: 1194339039
Effective search space used: 1194339039
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.2 bits)