RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] (398 letters) >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} (A:1-252) Length = 252 Score = 45.4 bits (106), Expect = 1e-05 Identities = 11/133 (8%), Positives = 38/133 (28%), Gaps = 19/133 (14%) Query: 267 NKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTL 326 + + + + + + + + K ++ T+ +N + Sbjct: 133 DMMGHGSDYSLSEVLWVCANLFSDVQFKMSH--------KRIMLFTNEDNPHGNDSAKAS 184 Query: 327 NTLQICEYMRNAGMKIYSVAVSAPPEGQ------DLLRKCTDSSGQFFAVNDSRELLESF 380 +R+ G+ + + + P D++ D + S Sbjct: 185 RARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESS-----KL 239 Query: 381 DKITDKIQEQSVR 393 + + K++ + R Sbjct: 240 EDLLRKVRAKETR 252 >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} (A:221-279,A:318-447,A:506-585) Length = 269 Score = 42.6 bits (99), Expect = 9e-05 Identities = 24/218 (11%), Positives = 57/218 (26%), Gaps = 44/218 (20%) Query: 202 APAPANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYN------------IGIVG 249 R+ + E+ +L++ I + R+ + Y Sbjct: 20 IRNKNARRAERAGEATRSLIDKI------TSDSENRVALVTYASTIDYSYLKLTNDKNDI 73 Query: 250 NQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVI 309 + E + + T T A+ A L + + +K + Sbjct: 74 VELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNS--------QKVIF 125 Query: 310 FITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRK---------C 360 ITDG + + + + ++ + +P + LL Sbjct: 126 HITDGVPTMSYPINF-----NHATFAPSYQNQLNAFFSKSPNKDGILLSDFITQATSGEH 180 Query: 361 TDSSGQFFAVNDSRELLESFDKIT----DKIQEQSVRI 394 T G + +++ ++ D I + Sbjct: 181 TIVRGDGQSNSNTAKITNHGDPTRWYYNGNIAPDGYDV 218 Score = 39.5 bits (91), Expect = 7e-04 Identities = 18/271 (6%), Positives = 60/271 (22%), Gaps = 39/271 (14%) Query: 148 ISICMVLDVSRSME---------------------DLYLQKHNDNNNMT--SNKYLLPPP 184 + + ++LD S SM D + + ++ Sbjct: 5 LDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIDYSYL 64 Query: 185 PKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAG-NLVNSIQKAIQEKKNLSVRIGTIAY 243 + + P A + ++ + ++ KA + + R + Sbjct: 65 KLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQA-RQNSQKV 123 Query: 244 NIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 I T + N + + L + + + + Sbjct: 124 IFHITDGVPTMSYPINFNHATFAPSYQNQLNAFFSKSPNKDGILLSDFITQATSGEHTIV 183 Query: 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP-------EGQDL 356 + + + G +++V + Sbjct: 184 RGDGQSNSNTAKITN----HGDPTRWYYNGNIAPDGYDVFTVGIGINGDPGTDEATATSF 239 Query: 357 LRKCTDSSGQFFAVNDSRELLESFDKITDKI 387 ++ + + V + + +++ Sbjct: 240 MQSISSKPENYTNVT---DTTKILEQLNRYF 267 >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} (A:) Length = 212 Score = 36.1 bits (82), Expect = 0.008 Identities = 25/250 (10%), Positives = 68/250 (27%), Gaps = 57/250 (22%) Query: 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPA 204 + ++ + ++ +S S + Sbjct: 1 DNSVDLYFLMGLSGSAQG------------------------------------------ 18 Query: 205 PANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKS 264 + + +L+ ++ + + S RIG + + L+ + ++ + Sbjct: 19 ----HLSNVQTLGSDLLKALN-----EISRSGRIGFGSIVN-MTFQHILKLTADSSQFQR 68 Query: 265 RLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQN 324 L K T A ++ +F++ +TD + A Sbjct: 69 ELRKQLVSGKLATPKGQLDAVVQVAICLGEIGW----RNGTRFLVLVTDNDFHLAKDKTL 124 Query: 325 TLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKIT 384 S L K +++ Q V S ++++++K+T Sbjct: 125 GTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVPS-RMVKTYEKLT 183 Query: 385 DKIQEQSVRI 394 I + ++ Sbjct: 184 TFIPKLTIGE 193 >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} (A:) Length = 457 Score = 33.0 bits (73), Expect = 0.066 Identities = 4/30 (13%), Positives = 8/30 (26%), Gaps = 3/30 (10%) Query: 120 LKGLIPSALTNLSLRS---TGIIERSSENL 146 L P+ + + G + E Sbjct: 424 LSTDNPAVTYTFTSENGAIVGTVTTPFEAP 453 Score = 26.8 bits (57), Expect = 4.5 Identities = 3/17 (17%), Positives = 6/17 (35%) Query: 116 ENLFLKGLIPSALTNLS 132 EN + G + + Sbjct: 438 ENGAIVGTVTTPFEAPQ 454 >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, alternative splicing, glycoprotein, immune response, inflammatory response, innate immunity, membrane; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} (A:) Length = 605 Score = 28.3 bits (60), Expect = 1.8 Identities = 3/16 (18%), Positives = 7/16 (43%) Query: 120 LKGLIPSALTNLSLRS 135 ++ PS + + S Sbjct: 581 MECATPSDKQGMPVLS 596 >2z7x_B TOLL-like receptor 1, variable lymphocyte receptor B; TLR2, TLR1, lipopeptide, innate immunity, glycoprotein, immune response, inflammatory response, leucine-rich repeat, membrane; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} (B:1-484) Length = 484 Score = 27.7 bits (59), Expect = 2.7 Identities = 5/17 (29%), Positives = 7/17 (41%), Gaps = 1/17 (5%) Query: 120 LKGLIPSALTNL-SLRS 135 LK + L SL+ Sbjct: 456 LKSVPDGIFDRLTSLQK 472 >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} (W:) Length = 461 Score = 27.2 bits (58), Expect = 4.0 Identities = 5/68 (7%), Positives = 22/68 (32%), Gaps = 11/68 (16%) Query: 124 IPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPP 183 + + +L ++ + S+ + +L + + + L + +T + Sbjct: 1 MSLDIQSLDIQCEEL----SDARWAELLPLL---QQCQVVRLD----DCGLTEARCKDIS 49 Query: 184 PPKKSFWS 191 + + Sbjct: 50 SALRVNPA 57 >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} (A:150-424,A:686-712) Length = 302 Score = 26.9 bits (58), Expect = 4.5 Identities = 12/96 (12%), Positives = 31/96 (32%), Gaps = 4/96 (4%) Query: 214 IESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE 273 ++ A +LV S +E + + + + + TP +RL L+P Sbjct: 130 VDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTA---TPEQLGXESHFARLRLLDPNR 186 Query: 274 NTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVI 309 + + + ++ + +L + Sbjct: 187 F-HDFAQFVEEQKNYCPVADAVAXLLAGNKLSNDEL 221 >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle/ligase/protein turnover complex; HET: TPO; 2.30A {Homo sapiens} (B:48-336) Length = 289 Score = 26.8 bits (57), Expect = 5.0 Identities = 2/16 (12%), Positives = 6/16 (37%) Query: 120 LKGLIPSALTNLSLRS 135 L + L + + + Sbjct: 12 LHPDVTGRLLSQGVIA 27 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} (F:1-76) Length = 76 Score = 26.6 bits (58), Expect = 5.9 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%) Query: 186 KKSFWSKNTTKSKYAPAPAPANRKIDVLIE 215 K++ + YA APA I +E Sbjct: 19 KQALKKLQASLKLYADDSAPA-LAIKATME 47 >1ls4_A Apolp-III, apolipophorin-III; helix-bundle, exchangeable apolipoprotein, lipid transport; NMR {Locusta migratoria} (A:) Length = 180 Score = 26.1 bits (56), Expect = 7.5 Identities = 13/43 (30%), Positives = 23/43 (53%) Query: 191 SKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKKN 233 ++ + + +AP + + E+A NL NSIQ A+Q+ N Sbjct: 138 TQASAQEAWAPVQSALQEAAEKTKEAAANLQNSIQSAVQKPAN 180 >1uf2_K Structural protein P7; virus components, icosahedral virus; 3.50A {Rice dwarf virus} (K:) Length = 506 Score = 26.1 bits (57), Expect = 8.5 Identities = 8/23 (34%), Positives = 12/23 (52%) Query: 55 TKKDQTSTIFKKQIKKHLKQGSY 77 T D ++ + I KH+ GSY Sbjct: 306 TDSDAYEKLYSETISKHVSDGSY 328 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.314 0.129 0.359 Gapped Lambda K H 0.267 0.0276 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,695,217 Number of extensions: 112341 Number of successful extensions: 275 Number of sequences better than 10.0: 1 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 21 Length of query: 398 Length of database: 4,956,049 Length adjustment: 90 Effective length of query: 308 Effective length of database: 1,913,599 Effective search space: 589388492 Effective search space used: 589388492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 56 (26.8 bits)