RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781108|ref|YP_003065521.1| von Willebrand factor type A
[Candidatus Liberibacter asiaticus str. psy62]
(398 letters)
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 209
Score = 42.7 bits (99), Expect = 5e-05
Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 19/198 (9%)
Query: 208 RKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLN 267
+S NL+ + + T A I S+N + V +LN
Sbjct: 17 SNFTGAKKSLVNLIEKVA---SYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLN 73
Query: 268 KLNPYE-----NTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN------ 316
++N + TNT A+ Y + + G R + +I +TDG +
Sbjct: 74 EINYEDHKLKSGTNTKKALQAVYSMMSWPDDV--PPEGWNRTRHVIILMTDGLHNMGGDP 131
Query: 317 -SGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDL--LRKCTDSSGQFFAVNDS 373
+ ++ L + + R + +Y V ++ L D+ F V D
Sbjct: 132 ITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDM 191
Query: 374 RELLESFDKITDKIQEQS 391
L + F ++ D+ Q S
Sbjct: 192 ENLEDVFYQMIDESQSLS 209
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1
alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 38.1 bits (87), Expect = 0.001
Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 222 NSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTN-TYPA 280
+ +++ K + Y+ + N +S + + T
Sbjct: 28 EFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATG 87
Query: 281 MHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGM 340
+ REL+N + K ++ ITDGE G + L + G+
Sbjct: 88 IRKVVRELFNITNGARKNA-----FKILVVITDGEKFG-----DPLGYEDVIPEADREGV 137
Query: 341 KIYSV----AVSAPPEGQDLLRKCTDSSGQ-FFAVNDSRELLESFDKITDKI 387
Y + A + Q+L + F VN+ L +++ +KI
Sbjct: 138 IRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKI 189
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 38.0 bits (87), Expect = 0.001
Identities = 28/200 (14%), Positives = 69/200 (34%), Gaps = 31/200 (15%)
Query: 209 KIDV--LIESAGNLVNSIQKAIQEKKNL--SVRIGTIAYNIGIVGNQCT-----PLS--N 257
++D+ +++ + + + +L + IG +GIV L+ +
Sbjct: 1 QLDIVIVLDGSNS-IYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYS 59
Query: 258 NLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENS 317
+ EV K+ T A+ E+ G + ++ +TDGE+
Sbjct: 60 STEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKK---VMVIVTDGESH 116
Query: 318 GASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD----------SSGQF 367
+ ++ + + ++ +S+A+ +L + + F
Sbjct: 117 DNHRLK------KVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHF 170
Query: 368 FAVNDSRELLESFDKITDKI 387
F V+D L+ + ++I
Sbjct: 171 FNVSDELALVTIVKTLGERI 190
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 189
Score = 36.9 bits (84), Expect = 0.003
Identities = 28/172 (16%), Positives = 65/172 (37%), Gaps = 16/172 (9%)
Query: 222 NSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTN-TYPA 280
N ++ I + + S + + ++ + + S L ++ + T A
Sbjct: 25 NFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATA 84
Query: 281 MHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGM 340
+ + L++ + K +I ITDG+ G ++L+ + AG+
Sbjct: 85 IQNVVHRLFHASYGARRDA-----AKILIVITDGKKEG-----DSLDYKDVIPMADAAGI 134
Query: 341 KIYSVAVSAPPEGQDLLRKCTD-----SSGQFFAVNDSRELLESFDKITDKI 387
Y++ V + ++ ++ D S F V D L + +++ +KI
Sbjct: 135 IRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKI 186
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 193
Score = 34.9 bits (79), Expect = 0.011
Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 23/143 (16%)
Query: 257 NNLNEVKSRLNKLNPYENTNTYP--AMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDG 314
E+ ++ + Y T A+ +A + Y+ + K ++ +TDG
Sbjct: 59 KTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSA-----TKVMVVVTDG 113
Query: 315 ENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDL--------LRKCTDSSGQ 366
E+ S + ++ + + + +AV L ++ +
Sbjct: 114 ESHDGSMLKAVIDQC------NHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTE 167
Query: 367 --FFAVNDSRELLESFDKITDKI 387
FF V+D LLE + ++I
Sbjct: 168 RYFFNVSDEAALLEKAGTLGEQI 190
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function
associated antigen-1, LFA-1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 31.7 bits (71), Expect = 0.11
Identities = 25/191 (13%), Positives = 63/191 (32%), Gaps = 25/191 (13%)
Query: 209 KIDV--LIESAGNL-VNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPL-------SNN 258
+D+ L + + +L + QK + K++ + +Y V +
Sbjct: 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVK 61
Query: 259 LNEVKSRLNKLNPYENTN-TYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENS 317
+ + L + T+ A+++ E++ E+ + K +I ITDGE +
Sbjct: 62 RKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDA-----TKVLIIITDGEAT 116
Query: 318 GASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQF-FAVNDSREL 376
+ + + L + + + +F ++ +L
Sbjct: 117 DSGNID--------AAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKL 168
Query: 377 LESFDKITDKI 387
+ ++ KI
Sbjct: 169 KDLCTELQKKI 179
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
[TaxId: 274]}
Length = 224
Score = 28.1 bits (62), Expect = 1.2
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 218 GNLVNSIQKAIQEKKNLSVRI-----GTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPY 272
G + +I + I+E K + G I +G L++N+ L P
Sbjct: 139 GTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPE 198
Query: 273 ENTNTY 278
T+
Sbjct: 199 GAKGTF 204
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 27.9 bits (61), Expect = 1.5
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 17/71 (23%)
Query: 324 NTLNTLQICEYMRNAGMKIYSVAVSAP--PEGQDLLRKC-----TDSSGQFFAVNDSREL 376
+ + + ++ G IY P P+GQ +R T
Sbjct: 337 DAVVAQKFARELQKEG--IYVTGFFYPVVPKGQARIRTQMSAAHTPE--------QITRA 386
Query: 377 LESFDKITDKI 387
+E+F +I ++
Sbjct: 387 VEAFTRIGKQL 397
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 27.7 bits (61), Expect = 1.7
Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 26/171 (15%)
Query: 144 ENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAP 203
E+ + I ++D+S SM+D N + + L + F +P
Sbjct: 2 EDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGF----GAFVDKPVSP 57
Query: 204 APANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVK 263
+ L ++ + K L L++ +
Sbjct: 58 YMYISPPEALENPCYDMKTTCLPMFGYKHVL-------------------TLTDQVTRFN 98
Query: 264 SRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDG 314
+ K + N + A + E ++ L ++F TD
Sbjct: 99 EEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHL---LVFTTDA 146
>d1rzhh1 b.41.1.1 (H:36-248) Photosynthetic reaction centre
{Rhodobacter sphaeroides [TaxId: 1063]}
Length = 213
Score = 27.4 bits (61), Expect = 2.2
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 169 NDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGN 219
N++ +N+ P P K+F + + P P +R I + +
Sbjct: 9 NEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSE 59
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 26.8 bits (58), Expect = 3.2
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 328 TLQICEYMRNAGMKIYSVAVSAP--PEGQDLLR 358
LQ+ E +R G + A+ P P G LR
Sbjct: 330 ALQLAEKLRQQG--CWVTAIRPPTVPAGTARLR 360
>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanosarcina barkeri [TaxId: 2208]}
Length = 247
Score = 25.9 bits (57), Expect = 6.7
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 15 YAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTT--KKDQTS 61
++ I+ ++Q+ LD V G +S TT + D +
Sbjct: 175 RRLENGTIIMDKDQVAIPLDRKVDLG--KPMSSEEAAKRTTIYRVDNVA 221
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 181
Score = 25.6 bits (56), Expect = 7.7
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 209 KIDVLIESAGNLVNSIQKAIQEKKNLSVRIGT 240
++L+ +A NL+ S+++ ++E + S++I T
Sbjct: 139 ATEMLVHNAQNLMQSVKETVREAEAASIKIRT 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.359
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,338,784
Number of extensions: 58306
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 15
Length of query: 398
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,213,086
Effective search space: 377269746
Effective search space used: 377269746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.2 bits)