BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781108|ref|YP_003065521.1| von Willebrand factor type A
[Candidatus Liberibacter asiaticus str. psy62]
(398 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 398
Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/398 (100%), Positives = 398/398 (100%)
Query: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60
MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT
Sbjct: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60
Query: 61 STIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPTENLFL 120
STIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPTENLFL
Sbjct: 61 STIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPTENLFL 120
Query: 121 KGLIPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYL 180
KGLIPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYL
Sbjct: 121 KGLIPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYL 180
Query: 181 LPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGT 240
LPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGT
Sbjct: 181 LPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGT 240
Query: 241 IAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIG 300
IAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIG
Sbjct: 241 IAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIG 300
Query: 301 STRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKC 360
STRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKC
Sbjct: 301 STRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKC 360
Query: 361 TDSSGQFFAVNDSRELLESFDKITDKIQEQSVRIAPNR 398
TDSSGQFFAVNDSRELLESFDKITDKIQEQSVRIAPNR
Sbjct: 361 TDSSGQFFAVNDSRELLESFDKITDKIQEQSVRIAPNR 398
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 94.7 bits (234), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/401 (22%), Positives = 185/401 (46%), Gaps = 62/401 (15%)
Query: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60
+TAI++ V F+ + I+ +H +++ ++ LD ++L I++ + +K+
Sbjct: 20 LTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKILNQENGNNGKKQKNDF 79
Query: 61 S-----TIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPT 115
S I++ + L++ + ++ +I + ++I D + Y + ++YE+P
Sbjct: 80 SYRIIKNIWQTDFRNELRENGF-AQDINNIERSTSLSIIIDDQHK-DYNLSAVSRYEMP- 136
Query: 116 ENLFLKGLIPSAL--TNLSLRSTGIIERSSE-NLAISICMVLDVSRSMEDLYLQKHNDNN 172
F+ P ++ L T ++ SS+ ++ + + MVLDVS SM D +
Sbjct: 137 ---FIFCTFPWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMNDHF-------- 185
Query: 173 NMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKK 232
P K+ V S +++ I K+I +
Sbjct: 186 -------------------------------GPGMDKLGVATRSIREMLDII-KSIPDVN 213
Query: 233 NLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEK 292
N+ VR G + ++ IV Q PL+ + ++ ++N+L T + P + +AY ++++ K
Sbjct: 214 NV-VRSGLVTFSSKIV--QTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAK 270
Query: 293 ES-SHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP 351
E H G KK++IF+TDGENS + + +L C + G +Y++ V A
Sbjct: 271 EKLEHIAKGHDDYKKYIIFLTDGENSSPNI--DNKESLFYCNEAKRRGAIVYAIGVQAEA 328
Query: 352 EGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDKIQEQSV 392
Q L+ C S +F++V +SR+L ++F +I ++ +Q +
Sbjct: 329 ADQ-FLKNCA-SPDRFYSVQNSRKLHDAFLRIGKEMVKQRI 367
>gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 420
Score = 69.7 bits (169), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 11/118 (9%)
Query: 275 TNTYPAMHHAYRELYNEKESSHNT--------IGSTRLKKFVIFITDGENSGASAYQNTL 326
T++ PAM AY+ L ++K+ S T I S +KF+IF+TDGEN+ +++ +
Sbjct: 292 TDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNN---FKSNV 348
Query: 327 NTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKIT 384
NT++IC+ + +KI +++++A P GQ LL+ C S + V ++ L+ F I+
Sbjct: 349 NTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNIS 406
Score = 31.2 bits (69), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 12 FITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVS------DR--TIKDPTTKK--DQTS 61
F+ Y +D Y +N M+SA +AA+L+G + +VS DR +I + + D
Sbjct: 39 FLIYVLDWH---YKKNSMESANNAAILAGASKMVSNLSRLGDRFESISNHAKRALIDDAK 95
Query: 62 TIFKKQIKKHLKQGSYIRENA--GDIAQKAQINITKDKNNPL 101
K IK+ L S + N +I ++I++T NN L
Sbjct: 96 RFIKNHIKESLSGYSAVFYNTEIQNIVNSSRISMTHMANNRL 137
>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 374
Score = 61.2 bits (147), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/402 (19%), Positives = 171/402 (42%), Gaps = 63/402 (15%)
Query: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKD-- 58
+TAI + + FL + I+++HI +++ + S +D +++ I+++ + K
Sbjct: 22 LTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGD 81
Query: 59 ---QTSTIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPT 115
+ + + L+ ++ + DI + ++I N Y + ++Y+IP
Sbjct: 82 ILCRIKNTWNMSFRNELRDNGFVND-IDDIVRSTSLDIVVVPQNE-GYSISAISRYKIPL 139
Query: 116 ENLFLKGLIPSALT--NLSLRSTGIIERSSENLA-ISICMVLDVSRSMEDLYLQKHNDNN 172
+ IP ++ + T ++ +S+ A + + +VLDVSRSME
Sbjct: 140 K---FCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSME----------- 185
Query: 173 NMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKK 232
SF+ + TK ID+ I+S ++ + K I +
Sbjct: 186 ---------------SFFDSSITK-------------IDMAIKSINAMLEEV-KLIPDVN 216
Query: 233 NLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE-NTNTYPAMHHAYRELYN- 290
N+ V+ G + ++ I + L ++ ++ ++ L+ + +TN+ P + +AY ++++
Sbjct: 217 NV-VQSGLVTFSNKI--EEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDM 273
Query: 291 EKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP 350
+ H KK ++F+TDGEN Q +L C + G +Y++ +
Sbjct: 274 QGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQ---QSLYYCNEAKKRGAIVYAIGIRV- 329
Query: 351 PEGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDKIQEQSV 392
+ LR C S F+ V + + ++F I I + +
Sbjct: 330 IRSHEFLRACA-SPNSFYLVENPHSMYDAFSHIGKDIVTKRI 370
>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 458
Score = 50.4 bits (119), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 94/448 (20%), Positives = 192/448 (42%), Gaps = 70/448 (15%)
Query: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60
+TA+++ V +D+ Y + ++ A A+++ ++ +++++ +++ +
Sbjct: 25 ITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLI--QSLEEVSSRAKNS 82
Query: 61 STIFKKQIKKHLKQG--SYIRENAGDIAQKAQINITKDKNNP----LQYIAESKAQYEIP 114
T K++I+++L + + +++N D + + T + NP Q + S+ +
Sbjct: 83 FTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDLLLN 142
Query: 115 TENLFLKGL-IPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNN 173
+LFL+ + I S L + + + +SI V+D SRSM D D+
Sbjct: 143 PLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQWVIDFSRSMLDY----QRDSEG 198
Query: 174 MTSNKYLLPPPPK-KSFWSKN----TTKSKYAPA-------------PAPAN-------- 207
N + P KS+ S+N K +P P P +
Sbjct: 199 QPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSLYYMLYPGPLDPSLSEEHF 258
Query: 208 ----------RKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSN 257
+K ++ ++ +++ SI+K + N +VR+G +N ++ + S
Sbjct: 259 VDSSSLRHVIKKKHLVRDALASVIRSIKKI--DNVNDTVRMGATFFNDRVISD--PSFSW 314
Query: 258 NLNE-----VKSRLNKLNPYENTNTYPAMHHAYRELYNEKESS-HNTIGSTRLKKFVIFI 311
+++ VK+ N +T AM AY + + E H + KK+++ +
Sbjct: 315 GVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLL 374
Query: 312 TDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQD----LLRKCTDSSGQF 367
TDGEN+ Q+ + IC ++ G++I ++A S Q+ L C S F
Sbjct: 375 TDGENT-----QDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA-SPNSF 428
Query: 368 FAVNDSRELLESF-DKITDKIQEQSVRI 394
F N + EL + F D+I ++I E+ +RI
Sbjct: 429 FEANSTHELNKIFRDRIGNEIFERVIRI 456
>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 30.8 bits (68), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 300 GSTRLKKFVIFITDGENSGASAYQNTLN-TLQICEYMR------NAGMKIYSVAVSAPPE 352
G++ K ++F + S +S + T++ LQ C YM + I+SV S +
Sbjct: 299 GASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQD 358
Query: 353 GQDLLRKCTDSSGQFFAVNDSRELL 377
+ LR+C +++ +N ++
Sbjct: 359 TRYTLRQCASDPSKYYEINSDENVM 383
>gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 411
Score = 27.3 bits (59), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 329 LQICEYM-------RNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELL 377
LQ C YM R+A + I+SV S + + LR+C +++ +N ++
Sbjct: 329 LQDCHYMHKRHRTGRDA-ITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVM 383
>gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 27.3 bits (59), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 328 TLQICEYM-------RNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELL 377
LQ C YM R+A + I+SV S + + LR+C +++ +N ++
Sbjct: 328 VLQDCHYMHKRHRTGRDA-ITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVM 383
>gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 27.3 bits (59), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 328 TLQICEYM-------RNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELL 377
LQ C YM R+A + I+SV S + + LR+C +++ +N ++
Sbjct: 328 VLQDCHYMHKRHRTGRDA-ITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVM 383
>gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
Length = 648
Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 38 LSGCASIVSDRTIKDPTTK--KDQTSTIFKKQIKKHLKQGSYIRENAGDIAQKA 89
L C + + D+ ++ ++ +D+ +F+K I +H G Y ++NA QK
Sbjct: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 412
Score = 24.6 bits (52), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 333 EYMRNAGMKIYSVAVSAPPE------GQDLLRKCTDSSGQFFAVNDSRELLESFDKITDK 386
EY+R G KI+ ++ Q++ K +++ F + D E +ESFD++ +
Sbjct: 310 EYIRMNGEKIHGASIHDLISHNNRNLAQEINDKFSNTMKDFHILKDRAENIESFDQMISE 369
Query: 387 IQEQSVRIAPN 397
+ +I N
Sbjct: 370 NNPEGNKIVRN 380
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.314 0.129 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,789
Number of Sequences: 1233
Number of extensions: 10050
Number of successful extensions: 41
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 20
length of query: 398
length of database: 328,796
effective HSP length: 76
effective length of query: 322
effective length of database: 235,088
effective search space: 75698336
effective search space used: 75698336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 39 (19.6 bits)