Query gi|254781109|ref|YP_003065522.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 86
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 21:57:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781109.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1wku_A Alpha-actinin 3; calpo 48.6 7.5 0.00022 19.1 1.3 13 21-33 9-21 (31)
2 >2zzr_A Unsaturated glucuronyl 42.7 6.9 0.0002 19.3 0.3 15 38-52 23-37 (90)
3 >2zw3_A GAP junction beta-2 pr 23.8 53 0.0016 14.5 3.3 20 56-75 69-88 (226)
4 >1dsk_A VPR protein; viral pep 22.9 23 0.00069 16.4 0.3 14 18-35 10-23 (28)
5 >1rkt_A Protein YFIR; transcri 18.7 68 0.002 13.9 4.6 40 18-57 81-120 (123)
6 >3c7a_A Octopine dehydrogenase 16.6 66 0.0019 14.0 1.4 23 20-42 86-108 (142)
7 >2d0t_A Indoleamine 2,3-dioxyg 14.1 74 0.0022 13.7 1.2 18 50-67 34-51 (54)
8 >1g5a_A Amylosucrase; glycosyl 11.5 89 0.0026 13.2 0.9 14 55-68 15-28 (62)
9 >3c1d_A Protein ORAA, regulato 8.4 1.4E+02 0.0042 12.1 1.4 9 23-31 49-57 (61)
10 >2w0c_T Protein P6, protein VI 8.1 36 0.0011 15.4 -2.1 20 19-38 19-39 (44)
No 1
>>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A (A:132-162)
Probab=48.58 E-value=7.5 Score=19.09 Aligned_cols=13 Identities=38% Similarity=1.014 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 8988999998421
Q gi|254781109|r 21 SFIDSIILWCQHS 33 (86)
Q Consensus 21 sfidsiilwcqhs 33 (86)
|--|...||||..
T Consensus 9 sAKdaLLLWCQrK 21 (31)
T 1wku_A 9 SAKEGLLLWCQRK 21 (31)
T ss_dssp EHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 7899999999998
No 2
>>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} (A:149-238)
Probab=42.73 E-value=6.9 Score=19.30 Aligned_cols=15 Identities=33% Similarity=0.815 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999989999999999
Q gi|254781109|r 38 FVIDSLMNLALIMLI 52 (86)
Q Consensus 38 fvidslmnlalimli 52 (86)
..||++|||.|..--
T Consensus 23 vIID~mmNL~LL~wA 37 (90)
T 2zzr_A 23 LIIDCLLNIQLLFFA 37 (90)
T ss_dssp EETTHHHHTHHHHHH
T ss_pred EEECHHHHHHHHHHH
T ss_conf 566635319999999
No 3
>>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane channel, two double layered lipid spanning, cellular adhesion, cell junction; 3.50A {Homo sapiens} (A:)
Probab=23.79 E-value=53 Score=14.48 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 64113458999999999999
Q gi|254781109|r 56 RPVSHRRFFALLFIYLIIIF 75 (86)
Q Consensus 56 rpvshrrffallfiyliiif 75 (86)
.|+||-||+++-+|.+-.-.
T Consensus 69 fPiShiRfW~~Qii~vs~Ps 88 (226)
T 2zw3_A 69 FPISHIRLWALQLIFVSTPA 88 (226)
T ss_dssp CSSCHHHHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHHCHH
T ss_conf 87618999999999995429
No 4
>>1dsk_A VPR protein; viral peptide, polypeptide; NMR {Human immunodeficiency virus type 1} (A:)
Probab=22.90 E-value=23 Score=16.42 Aligned_cols=14 Identities=50% Similarity=0.968 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHCCCH
Q ss_conf 048898899999842111
Q gi|254781109|r 18 IFISFIDSIILWCQHSRH 35 (86)
Q Consensus 18 ifisfidsiilwcqhsrh 35 (86)
.||.|- .-|||||-
T Consensus 10 lfiHFR----iGC~HSrI 23 (28)
T 1dsk_A 10 LFIHFR----IGCRHSRI 23 (28)
T ss_dssp HHHHHH----HHHTTTTG
T ss_pred HHHHEE----CCCCCCCC
T ss_conf 898602----15630420
No 5
>>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:83-205)
Probab=18.68 E-value=68 Score=13.88 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0488988999998421118999998999999999997064
Q gi|254781109|r 18 IFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRP 57 (86)
Q Consensus 18 ifisfidsiilwcqhsrhvdfvidslmnlalimlivlcrp 57 (86)
.||||+|.++|-.++-------.+..++...-+|.-.-+|
T Consensus 81 ~~Is~~DGLmL~~~~l~~e~~~v~~Q~E~~~~~L~~~L~p 120 (123)
T 1rkt_A 81 FFLNXNDGIIQNALYFDEEKADVSGLAESAKLYLKTVLQA 120 (123)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999865887568899999999999976083
No 6
>>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* (A:205-269,A:328-404)
Probab=16.55 E-value=66 Score=13.96 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 88988999998421118999998
Q gi|254781109|r 20 ISFIDSIILWCQHSRHVDFVIDS 42 (86)
Q Consensus 20 isfidsiilwcqhsrhvdfvids 42 (86)
...+|.+|+|+|.-....|+.|+
T Consensus 86 TP~iD~vi~W~Q~~~gKEyLv~g 108 (142)
T 3c7a_A 86 IPSNDKLIMWAQEKIGKEYLVDG 108 (142)
T ss_dssp CHHHHHHHHHHHHHHTCCCCBTT
T ss_pred CCHHHHHHHHHHHHHCCHHHHCC
T ss_conf 76489999999998486202057
No 7
>>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} (A:263-316)
Probab=14.08 E-value=74 Score=13.68 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=12.9
Q ss_pred HHHHHHCCCCHHHHHHHH
Q ss_conf 999970641134589999
Q gi|254781109|r 50 MLIVLCRPVSHRRFFALL 67 (86)
Q Consensus 50 mlivlcrpvshrrffall 67 (86)
.-.--.+|..||+|..-+
T Consensus 34 ~emR~YMP~~HR~FL~~v 51 (54)
T 2d0t_A 34 QDMRRYMPPAHRNFLCSL 51 (54)
T ss_dssp HHHGGGSCHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHH
T ss_conf 999985749999999999
No 8
>>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} (A:395-456)
Probab=11.50 E-value=89 Score=13.24 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=9.8
Q ss_pred HCCCCHHHHHHHHH
Q ss_conf 06411345899999
Q gi|254781109|r 55 CRPVSHRRFFALLF 68 (86)
Q Consensus 55 crpvshrrffallf 68 (86)
-.|++||||..-.|
T Consensus 15 ~~~~~Hr~FL~dfy 28 (62)
T 1g5a_A 15 ISGYDHRQFLNRFF 28 (62)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 55667887763013
No 9
>>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} (A:1-61)
Probab=8.37 E-value=1.4e+02 Score=12.11 Aligned_cols=9 Identities=33% Similarity=1.280 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q ss_conf 889999984
Q gi|254781109|r 23 IDSIILWCQ 31 (86)
Q Consensus 23 idsiilwcq 31 (86)
||..|-||+
T Consensus 49 Ie~vIa~C~ 57 (61)
T 3c1d_A 49 YERVIAWCH 57 (61)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 10
>>2w0c_T Protein P6, protein VI; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2} (T:53-96)
Probab=8.10 E-value=36 Score=15.35 Aligned_cols=20 Identities=50% Similarity=0.966 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHCCCHHHH
Q ss_conf 48898899999-842111899
Q gi|254781109|r 19 FISFIDSIILW-CQHSRHVDF 38 (86)
Q Consensus 19 fisfidsiilw-cqhsrhvdf 38 (86)
||.+-|.|--| -.|.||-||
T Consensus 19 fiayddrikawlgthdrhkdf 39 (44)
T 2w0c_T 19 FIAYDDRIKAWLGTHDRHKDF 39 (44)
T ss_dssp HHHHHHSCSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCHHHHH
T ss_conf 455358899886465047879
Done!