Query gi|254781109|ref|YP_003065522.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 86 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:21:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781109.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1rzhh2 f.23.10.1 (H:11-35) Ph 16.0 29 0.0021 13.7 1.5 12 61-72 11-22 (26) 2 d2guma1 e.76.1.1 (A:111-725) G 12.4 41 0.003 12.9 2.4 36 27-62 416-453 (615) 3 d1bg6a1 a.100.1.5 (A:188-359) 8.4 31 0.0023 13.6 -0.3 23 19-41 128-150 (172) 4 d2djja1 c.47.1.2 (A:6-121) Pro 6.7 65 0.0047 11.9 0.7 18 28-45 30-47 (116) 5 d1rp1a2 c.69.1.19 (A:1-336) Pa 6.6 71 0.0051 11.6 0.8 16 30-45 262-277 (337) 6 d2b5ea1 c.47.1.2 (A:365-504) P 6.5 70 0.0051 11.7 0.7 18 28-45 40-57 (140) 7 d1fb6a_ c.47.1.1 (A:) Thioredo 6.4 71 0.0051 11.6 0.7 18 28-45 27-44 (104) 8 d1eysh2 f.23.10.1 (H:7-43) Pho 6.0 77 0.0056 11.4 1.5 11 62-72 15-25 (37) 9 d1bu8a2 c.69.1.19 (A:1-336) Pa 6.0 78 0.0056 11.4 0.8 16 30-45 263-278 (338) 10 d2es7a1 c.47.1.20 (A:7-125) Hy 5.9 78 0.0057 11.4 1.1 18 28-45 40-57 (119) No 1 >d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]} Probab=16.03 E-value=29 Score=13.75 Aligned_cols=12 Identities=42% Similarity=0.479 Sum_probs=7.6 Q ss_pred HHHHHHHHHHHH Q ss_conf 458999999999 Q gi|254781109|r 61 RRFFALLFIYLI 72 (86) Q Consensus 61 rrffallfiyli 72 (86) --|||+|..|+- T Consensus 11 w~ffalli~ylq 22 (26) T d1rzhh2 11 WIFLAGLIYYLQ 22 (26) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999985 No 2 >d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1 [TaxId: 10298]} Probab=12.44 E-value=41 Score=12.94 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=26.2 Q ss_pred HHHHHCCCHHHHHHH--HHHHHHHHHHHHHHCCCCHHH Q ss_conf 999842111899999--899999999999706411345 Q gi|254781109|r 27 ILWCQHSRHVDFVID--SLMNLALIMLIVLCRPVSHRR 62 (86) Q Consensus 27 ilwcqhsrhvdfvid--slmnlalimlivlcrpvshrr 62 (86) .-||+..+.---+-. |-.|-.-+|--++-||||-|. T Consensus 416 ~AWC~~Q~R~~~mW~ElsKINPs~v~SaiygrpVsAr~ 453 (615) T d2guma1 416 IAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARM 453 (615) T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCEEEEE T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH T ss_conf 99998766789999986368878889998399634324 No 3 >d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Probab=8.39 E-value=31 Score=13.57 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 48898899999842111899999 Q gi|254781109|r 19 FISFIDSIILWCQHSRHVDFVID 41 (86) Q Consensus 19 fisfidsiilwcqhsrhvdfvid 41 (86) -...+|++|.|||-..-.||--+ T Consensus 128 ~tP~i~~ii~~a~~~~g~d~~~~ 150 (172) T d1bg6a1 128 PTPLIDAVLDLISSLIDTDFRKE 150 (172) T ss_dssp CCHHHHHHHHHHHHHTTCCHHHH T ss_pred CCHHHHHHHHHHHHHHCCCHHHC T ss_conf 96048999999999977577751 No 4 >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Probab=6.74 E-value=65 Score=11.85 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=13.4 Q ss_pred HHHHCCCHHHHHHHHHHH Q ss_conf 998421118999998999 Q gi|254781109|r 28 LWCQHSRHVDFVIDSLMN 45 (86) Q Consensus 28 lwcqhsrhvdfvidslmn 45 (86) -||+|++...-..+.+.+ T Consensus 30 ~wC~~Ck~~~p~~~~la~ 47 (116) T d2djja1 30 PWCGHCKALAPKYEELGA 47 (116) T ss_dssp SSCTTHHHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHH T ss_conf 646656534069999999 No 5 >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} Probab=6.65 E-value=71 Score=11.64 Aligned_cols=16 Identities=31% Similarity=0.760 Sum_probs=13.9 Q ss_pred HHCCCHHHHHHHHHHH Q ss_conf 8421118999998999 Q gi|254781109|r 30 CQHSRHVDFVIDSLMN 45 (86) Q Consensus 30 cqhsrhvdfvidslmn 45 (86) |.|.|-+.|-++|+.+ T Consensus 262 CsH~ra~~yf~eSi~~ 277 (337) T d1rp1a2 262 CNHLRSYKYYSESILN 277 (337) T ss_dssp HHHHHHHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHCC T ss_conf 4305588999998278 No 6 >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=6.49 E-value=70 Score=11.67 Aligned_cols=18 Identities=22% Similarity=0.656 Sum_probs=13.0 Q ss_pred HHHHCCCHHHHHHHHHHH Q ss_conf 998421118999998999 Q gi|254781109|r 28 LWCQHSRHVDFVIDSLMN 45 (86) Q Consensus 28 lwcqhsrhvdfvidslmn 45 (86) -||.|++...-+.+.+-. T Consensus 40 ~wC~~C~~~~p~~~~la~ 57 (140) T d2b5ea1 40 PWCGHCKRLAPTYQELAD 57 (140) T ss_dssp TTCHHHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHH T ss_conf 447543025799999999 No 7 >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Probab=6.42 E-value=71 Score=11.64 Aligned_cols=18 Identities=33% Similarity=0.696 Sum_probs=13.1 Q ss_pred HHHHCCCHHHHHHHHHHH Q ss_conf 998421118999998999 Q gi|254781109|r 28 LWCQHSRHVDFVIDSLMN 45 (86) Q Consensus 28 lwcqhsrhvdfvidslmn 45 (86) -||.+++...-+...+.+ T Consensus 27 ~wC~~C~~~~~~~~~l~~ 44 (104) T d1fb6a_ 27 PWCGPCKLIAPVIDELAK 44 (104) T ss_dssp TTCHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHH T ss_conf 864776535833688877 No 8 >d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]} Probab=6.04 E-value=77 Score=11.45 Aligned_cols=11 Identities=55% Similarity=0.712 Sum_probs=6.4 Q ss_pred HHHHHHHHHHH Q ss_conf 58999999999 Q gi|254781109|r 62 RFFALLFIYLI 72 (86) Q Consensus 62 rffallfiyli 72 (86) -|||.|-+||- T Consensus 15 ~FFagLi~YL~ 25 (37) T d1eysh2 15 LFFFGLIIYLR 25 (37) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999997 No 9 >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=5.96 E-value=78 Score=11.42 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=13.6 Q ss_pred HHCCCHHHHHHHHHHH Q ss_conf 8421118999998999 Q gi|254781109|r 30 CQHSRHVDFVIDSLMN 45 (86) Q Consensus 30 cqhsrhvdfvidslmn 45 (86) |-|.|-++|-++|+.| T Consensus 263 CsH~ra~~yf~ESI~~ 278 (338) T d1bu8a2 263 CNHLRSYKYYASSILN 278 (338) T ss_dssp HHHHHHHHHHHHHHHC T ss_pred CCHHHHHHHHHHHHCC T ss_conf 6258899999998458 No 10 >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Probab=5.89 E-value=78 Score=11.40 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=14.6 Q ss_pred HHHHCCCHHHHHHHHHHH Q ss_conf 998421118999998999 Q gi|254781109|r 28 LWCQHSRHVDFVIDSLMN 45 (86) Q Consensus 28 lwcqhsrhvdfvidslmn 45 (86) -||.+++.+.-+++.|.+ T Consensus 40 ~wCp~C~~~~pvl~eL~~ 57 (119) T d2es7a1 40 RRTPEVSDNPVMIAELLR 57 (119) T ss_dssp CC----CCHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHH T ss_conf 989027789889999998 Done!