BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781109|ref|YP_003065522.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62] (86 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781109|ref|YP_003065522.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62] gi|254040786|gb|ACT57582.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62] Length = 86 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 86/86 (100%), Positives = 86/86 (100%) Query: 1 MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60 MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH Sbjct: 1 MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60 Query: 61 RRFFALLFIYLIIIFRFMLLIVKAVF 86 RRFFALLFIYLIIIFRFMLLIVKAVF Sbjct: 61 RRFFALLFIYLIIIFRFMLLIVKAVF 86 >gi|315122478|ref|YP_004062967.1| hypothetical protein CKC_03650 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495880|gb|ADR52479.1| hypothetical protein CKC_03650 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 86 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 52/70 (74%), Positives = 63/70 (90%) Query: 1 MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60 M LKN KLLLRGRNI+I ISF+DSIILW +H+ HVDFVIDSLMNL+L++LI++C P+S+ Sbjct: 1 MFLKNCNKLLLRGRNIIIVISFLDSIILWYKHNNHVDFVIDSLMNLSLVLLIIICNPISN 60 Query: 61 RRFFALLFIY 70 RRFFALLFIY Sbjct: 61 RRFFALLFIY 70 Searching..................................................done Results from round 2 CONVERGED! >gi|254781109|ref|YP_003065522.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62] gi|254040786|gb|ACT57582.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62] Length = 86 Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 86/86 (100%), Positives = 86/86 (100%) Query: 1 MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60 MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH Sbjct: 1 MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60 Query: 61 RRFFALLFIYLIIIFRFMLLIVKAVF 86 RRFFALLFIYLIIIFRFMLLIVKAVF Sbjct: 61 RRFFALLFIYLIIIFRFMLLIVKAVF 86 >gi|315122478|ref|YP_004062967.1| hypothetical protein CKC_03650 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495880|gb|ADR52479.1| hypothetical protein CKC_03650 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 86 Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 62/85 (72%), Positives = 76/85 (89%) Query: 1 MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60 M LKN KLLLRGRNI+I ISF+DSIILW +H+ HVDFVIDSLMNL+L++LI++C P+S+ Sbjct: 1 MFLKNCNKLLLRGRNIIIVISFLDSIILWYKHNNHVDFVIDSLMNLSLVLLIIICNPISN 60 Query: 61 RRFFALLFIYLIIIFRFMLLIVKAV 85 RRFFALLFIYL+IIFRF+LLI K + Sbjct: 61 RRFFALLFIYLLIIFRFLLLIFKFI 85 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.345 0.165 0.512 Lambda K H 0.267 0.0491 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,963,394,356 Number of Sequences: 14124377 Number of extensions: 95699731 Number of successful extensions: 714294 Number of sequences better than 10.0: 125 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 108 Number of HSP's that attempted gapping in prelim test: 714188 Number of HSP's gapped (non-prelim): 181 length of query: 86 length of database: 4,842,793,630 effective HSP length: 56 effective length of query: 30 effective length of database: 4,051,828,518 effective search space: 121554855540 effective search space used: 121554855540 T: 11 A: 40 X1: 16 ( 8.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 38 (21.5 bits) S2: 76 (33.6 bits)