BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781109|ref|YP_003065522.1| hypothetical protein
CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62]
         (86 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781109|ref|YP_003065522.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040786|gb|ACT57582.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 86

 Score =  164 bits (414), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60
          MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH
Sbjct: 1  MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60

Query: 61 RRFFALLFIYLIIIFRFMLLIVKAVF 86
          RRFFALLFIYLIIIFRFMLLIVKAVF
Sbjct: 61 RRFFALLFIYLIIIFRFMLLIVKAVF 86


>gi|315122478|ref|YP_004062967.1| hypothetical protein CKC_03650 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495880|gb|ADR52479.1| hypothetical protein CKC_03650 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 86

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 63/70 (90%)

Query: 1  MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60
          M LKN  KLLLRGRNI+I ISF+DSIILW +H+ HVDFVIDSLMNL+L++LI++C P+S+
Sbjct: 1  MFLKNCNKLLLRGRNIIIVISFLDSIILWYKHNNHVDFVIDSLMNLSLVLLIIICNPISN 60

Query: 61 RRFFALLFIY 70
          RRFFALLFIY
Sbjct: 61 RRFFALLFIY 70


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254781109|ref|YP_003065522.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040786|gb|ACT57582.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 86

 Score = 82.1 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60
          MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH
Sbjct: 1  MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60

Query: 61 RRFFALLFIYLIIIFRFMLLIVKAVF 86
          RRFFALLFIYLIIIFRFMLLIVKAVF
Sbjct: 61 RRFFALLFIYLIIIFRFMLLIVKAVF 86


>gi|315122478|ref|YP_004062967.1| hypothetical protein CKC_03650 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495880|gb|ADR52479.1| hypothetical protein CKC_03650 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 86

 Score = 76.0 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/85 (72%), Positives = 76/85 (89%)

Query: 1  MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60
          M LKN  KLLLRGRNI+I ISF+DSIILW +H+ HVDFVIDSLMNL+L++LI++C P+S+
Sbjct: 1  MFLKNCNKLLLRGRNIIIVISFLDSIILWYKHNNHVDFVIDSLMNLSLVLLIIICNPISN 60

Query: 61 RRFFALLFIYLIIIFRFMLLIVKAV 85
          RRFFALLFIYL+IIFRF+LLI K +
Sbjct: 61 RRFFALLFIYLLIIFRFLLLIFKFI 85


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.345    0.165    0.512 

Lambda     K      H
   0.267   0.0491    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,963,394,356
Number of Sequences: 14124377
Number of extensions: 95699731
Number of successful extensions: 714294
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 714188
Number of HSP's gapped (non-prelim): 181
length of query: 86
length of database: 4,842,793,630
effective HSP length: 56
effective length of query: 30
effective length of database: 4,051,828,518
effective search space: 121554855540
effective search space used: 121554855540
T: 11
A: 40
X1: 16 ( 8.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 76 (33.6 bits)