RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781109|ref|YP_003065522.1| hypothetical protein
CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62]
         (86 letters)



>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease
          protein MalF {Escherichia coli [TaxId: 562]}
          Length = 248

 Score = 22.9 bits (49), Expect = 8.0
 Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 46 LALIMLIVLCRP---VSHRRFFALLFIYLIIIFRFMLLIVKAVF 86
           A+  LI+        ++R+ +A  ++Y  +    + ++   V 
Sbjct: 30 FAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVC 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.347    0.155    0.474 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 311,192
Number of extensions: 11447
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 10
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 47 (22.0 bits)