BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781109|ref|YP_003065522.1| hypothetical protein
CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62]
         (86 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781109|ref|YP_003065522.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 86

 Score =  164 bits (414), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60
          MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH
Sbjct: 1  MILKNSTKLLLRGRNIVIFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRPVSH 60

Query: 61 RRFFALLFIYLIIIFRFMLLIVKAVF 86
          RRFFALLFIYLIIIFRFMLLIVKAVF
Sbjct: 61 RRFFALLFIYLIIIFRFMLLIVKAVF 86


>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 371

 Score = 21.9 bits (45), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 29  WCQHSRHVDFV------IDSLMNLALIMLIVLCRPVSHRRFFALLFIYLIII---FRFML 79
           WC +S H   +      I S  ++ L M++VL   +S    F      L +     R ML
Sbjct: 144 WCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREML 203

Query: 80  LIVKAV 85
            I+K++
Sbjct: 204 DIIKSI 209


>gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus Liberibacter asiaticus str. psy62]
          Length = 473

 Score = 20.4 bits (41), Expect = 6.7,   Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 23  IDSIILWCQHSRHVDFVIDS 42
           +D++IL  Q  ++V F++ S
Sbjct: 181 VDNVILEDQSKKNVQFIVGS 200


>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 957

 Score = 20.0 bits (40), Expect = 7.0,   Method: Composition-based stats.
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 16  IVIFISFIDSIILWCQ 31
           I +   F+ + I+WCQ
Sbjct: 880 IKVLSRFVQAEIVWCQ 895


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.347    0.155    0.474 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,164
Number of Sequences: 1233
Number of extensions: 1627
Number of successful extensions: 7
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 328,796
effective HSP length: 55
effective length of query: 31
effective length of database: 260,981
effective search space:  8090411
effective search space used:  8090411
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 31 (16.5 bits)