HHsearch alignment for GI: 254781110 and conserved domain: cd00198
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.39 E-value=4.3e-11 Score=90.78 Aligned_cols=151 Identities=23% Similarity=0.238 Sum_probs=111.6
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 20122102232422335787666675346766530678899989999851046787655430223204876431244577
Q gi|254781110|r 192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSW 271 (420)
Q Consensus 192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 271 (420)
T Consensus 2 div~vlD~S~Sm~--------------------~~~~~~~k~~~~~~~~~l~~~---~~~~~v~vv~f~~~~~~~~~~~~ 58 (161)
T cd00198 2 DIVFLLDVSGSMG--------------------GEKLDKAKEALKALVSSLSAS---PPGDRVGLVTFGSNARVVLPLTT 58 (161)
T ss_pred EEEEEEECCCCCC--------------------CHHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEECCCEEEEECCCC
T ss_conf 0999991889988--------------------079999999999999987655---99988999993795148814741
Q ss_pred C--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 8--48899999986404678876538899999986131012334554334776778776662489960686777776534
Q gi|254781110|r 272 G--TEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVN 349 (420)
Q Consensus 272 ~--~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~ 349 (420)
T Consensus 59 ~~~~~~~~~~i~~~~~-~~~g~t~~~~al~~a~~~~~~~~----------------~~~~~~~iiliTDG~~~~~~--~~ 119 (161)
T cd00198 59 DTDKADLLEAIDALKK-GLGGGTNIGAALRLALELLKSAK----------------RPNARRVIILLTDGEPNDGP--EL 119 (161)
T ss_pred HHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHC----------------CCCCCEEEEEECCCCCCCCH--HH
T ss_conf 2579999997751356-89998389999999999987532----------------55565179996789989873--67
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 899999999789879999954897789999986218
Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINASPNGQRLLKTCVSS 385 (420)
Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~ 385 (420)
T Consensus 120 ~~~~~~~~~~~~v~i~~igig~~~~~~-~l~~ia~~ 154 (161)
T cd00198 120 LAEAARELRKLGITVYTIGIGDDANED-ELKEIADK 154 (161)
T ss_pred HHHHHHHHHHCCCEEEEEEECHHHCHH-HHHHHHHC
T ss_conf 999999999779989999966111999-99999838