HHsearch alignment for GI: 254781110 and conserved domain: cd00198

>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.39  E-value=4.3e-11  Score=90.78  Aligned_cols=151  Identities=23%  Similarity=0.238  Sum_probs=111.6

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             20122102232422335787666675346766530678899989999851046787655430223204876431244577
Q gi|254781110|r  192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSW  271 (420)
Q Consensus       192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~  271 (420)
T Consensus         2 div~vlD~S~Sm~--------------------~~~~~~~k~~~~~~~~~l~~~---~~~~~v~vv~f~~~~~~~~~~~~   58 (161)
T cd00198           2 DIVFLLDVSGSMG--------------------GEKLDKAKEALKALVSSLSAS---PPGDRVGLVTFGSNARVVLPLTT   58 (161)
T ss_pred             EEEEEEECCCCCC--------------------CHHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEECCCEEEEECCCC
T ss_conf             0999991889988--------------------079999999999999987655---99988999993795148814741


Q ss_pred             C--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf             8--48899999986404678876538899999986131012334554334776778776662489960686777776534
Q gi|254781110|r  272 G--TEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVN  349 (420)
Q Consensus       272 ~--~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~  349 (420)
T Consensus        59 ~~~~~~~~~~i~~~~~-~~~g~t~~~~al~~a~~~~~~~~----------------~~~~~~~iiliTDG~~~~~~--~~  119 (161)
T cd00198          59 DTDKADLLEAIDALKK-GLGGGTNIGAALRLALELLKSAK----------------RPNARRVIILLTDGEPNDGP--EL  119 (161)
T ss_pred             HHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHC----------------CCCCCEEEEEECCCCCCCCH--HH
T ss_conf             2579999997751356-89998389999999999987532----------------55565179996789989873--67


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCC
Q ss_conf             899999999789879999954897789999986218
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINASPNGQRLLKTCVSS  385 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~  385 (420)
T Consensus       120 ~~~~~~~~~~~~v~i~~igig~~~~~~-~l~~ia~~  154 (161)
T cd00198         120 LAEAARELRKLGITVYTIGIGDDANED-ELKEIADK  154 (161)
T ss_pred             HHHHHHHHHHCCCEEEEEEECHHHCHH-HHHHHHHC
T ss_conf             999999999779989999966111999-99999838