HHsearch alignment for GI: 254781110 and conserved domain: cd01452
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=97.42 E-value=0.0071 Score=37.26 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=103.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 76653067889998999985104678765543022320487-64312445778488999999864046788765388999
Q gi|254781110|r 221 QDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTT-RVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMK 299 (420)
Q Consensus 221 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~ 299 (420)
T Consensus 19 GDy~PtR~~AQ~dAvn~i~~~k~~~Np---En~VGl~tmag~~~~Vl~TlT~D~gkiL~~lh~i~---~~G~~~~~~~Iq 92 (187)
T cd01452 19 GDYPPTRFQAQADAVNLICQAKTRSNP---ENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQ---PKGKANFITGIQ 92 (187)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCEEEEEECCCCCEEEEECCCCHHHHHHHCCCCC---CCCEECHHHHHH
T ss_conf 898971899999999999977751495---33113576158986689844865788987532677---187651887999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHH
Q ss_conf 99986131012334554334776778776662489960686777776534899999999789879999954897789999
Q gi|254781110|r 300 QAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPNGQRLL 379 (420)
Q Consensus 300 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l 379 (420)
T Consensus 93 iA~LALKHRq----------------nk~~~qRIv~FV-gSPi~~-~ek~l~~laKklKKnnV~vDII~FGe~~~n~~kL 154 (187)
T cd01452 93 IAQLALKHRQ----------------NKNQKQRIVAFV-GSPIEE-DEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKL 154 (187)
T ss_pred HHHHHHHCCC----------------CCCCCEEEEEEE-CCCCCC-CHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 9999972346----------------777544799997-898755-7899999999875558535899946888998999
Q ss_pred HH---HH-CC-CCCEEEECCHHH-HHHH
Q ss_conf 98---62-18-982798179899-9999
Q gi|254781110|r 380 KT---CV-SS-PEYHYNVVNADS-LIHV 401 (420)
Q Consensus 380 ~~---ca-s~-~~~yf~a~~~~~-L~~a 401 (420)
T Consensus 155 ~~f~~~vn~~~~Shlv~ippg~~lLSd~ 182 (187)
T cd01452 155 TAFIDAVNGKDGSHLVSVPPGENLLSDA 182 (187)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHH
T ss_conf 9999984589982599947998645676