HHsearch alignment for GI: 254781110 and conserved domain: cd01454
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.95 E-value=1.2e-07 Score=68.23 Aligned_cols=149 Identities=21% Similarity=0.302 Sum_probs=94.3
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC--C---CC
Q ss_conf 012210223242233578766667534676653067889998999985104678765543022320487643--1---24
Q gi|254781110|r 193 IELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE--K---NI 267 (420)
Q Consensus 193 ~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~ 267 (420)
T Consensus 3 V~lLlD~SgSM~~-------------------~~~i~~a~~a~~~l~~aL~~~-----g~~~~v~gF~s~~~~r~~~~~~ 58 (174)
T cd01454 3 VTLLLDLSGSMRS-------------------DRRIDVAKKAAVLLAEALEAC-----GVPHAILGFTTDAGGRERVRWI 58 (174)
T ss_pred EEEEEECCCCCCC-------------------CCHHHHHHHHHHHHHHHHHHC-----CCCEEEEECCCCCCCCCCEEEE
T ss_conf 9999989868899-------------------848999999999999999976-----9956999515788984434789
Q ss_pred CC-CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 45-77848899999986404678876538899999986131012334554334776778776662489960686777776
Q gi|254781110|r 268 EP-SWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKS 346 (420)
Q Consensus 268 ~l-t~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~ 346 (420)
T Consensus 59 ~~k~f~e~~~~~~~~~i~~l~~~g~Tr~G~Air~a~~~L~~------------------~~~~rkiliviSDG~P~D~~~ 120 (174)
T cd01454 59 KIKDFDESLHERARKRLAALSPGGNTRDGAAIRHAAERLLA------------------RPEKRKILLVISDGEPNDLDY 120 (174)
T ss_pred ECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH------------------CCCCCEEEEEEECCCCCCCCC
T ss_conf 32366742114568888511878989617999999999863------------------976667999983899766777
Q ss_pred C--C-----HHHHHHHHHHHCCCEEEEEEECCCCC--HHHHHHHHH
Q ss_conf 5--3-----48999999997898799999548977--899999862
Q gi|254781110|r 347 N--V-----NTIKICDKAKENFIKIVTISINASPN--GQRLLKTCV 383 (420)
Q Consensus 347 ~--~-----~~~~~c~~~k~~gi~i~tIgf~~~~~--~~~~l~~ca 383 (420)
T Consensus 121 ~~~~~~~~~D~~~av~e~~~~GI~~~~i~i~~~~~~~~~~~l~~i~ 166 (174)
T cd01454 121 YEGNVFATEDALRAVIEARKLGIEVFGITIDRDATTVDKEYLKNIF 166 (174)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 8875538999999999999879889999989855566999999842