HHsearch alignment for GI: 254781110 and conserved domain: cd01462
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.18 E-value=1.8e-09 Score=80.22 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=98.7
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC-CCCC
Q ss_conf 201221022324223357876666753467665306788999899998510467876554302232048764312-4457
Q gi|254781110|r 192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN-IEPS 270 (420)
Q Consensus 192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt 270 (420)
T Consensus 2 pvV~vlD~SGSM~--------------------G~~~~~ak~~~~~l~~~l~~~-----~~~~~lv~F~~~~~~~~~~~~ 56 (152)
T cd01462 2 PVILLVDQSGSMY--------------------GAPEEVAKAVALALLRIALAE-----NRDTYLILFDSEFQTKIVDKT 56 (152)
T ss_pred CEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHHHHHC-----CCEEEEEEECCCCEEEECCCC
T ss_conf 9999997999989--------------------806999999999999973233-----980999991687357715876
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf 78488999999864046788765388999999861310123345543347767787766624899606867777765348
Q gi|254781110|r 271 WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT 350 (420)
Q Consensus 271 ~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~ 350 (420)
T Consensus 57 ~~~~~~~~~i---~~~~~~GGT~i~~aL~~A~~~l~~~------------------~~~~~~IvlITDG~~~~~~--~~~ 113 (152)
T cd01462 57 DDLEEPVEFL---SGVQLGGGTDINKALRYALELIERR------------------DPRKADIVLITDGYEGGVS--DEL 113 (152)
T ss_pred CCHHHHHHHH---HHCCCCCCCCHHHHHHHHHHHHHCC------------------CCCCCEEEEEECCCCCCCH--HHH
T ss_conf 4599999999---7253689865799999999987425------------------7656469998267567983--999
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC
Q ss_conf 9999999978987999995489778999998621
Q gi|254781110|r 351 IKICDKAKENFIKIVTISINASPNGQRLLKTCVS 384 (420)
Q Consensus 351 ~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas 384 (420)
T Consensus 114 ~~~~~~~~~~~~r~~~~~iG~~~~-p~~~~~~~~ 146 (152)
T cd01462 114 LREVELKRSRVARFVALALGDHGN-PGYDRISAE 146 (152)
T ss_pred HHHHHHHHHCCEEEEEEEECCCCC-CHHHHHHHH
T ss_conf 999999983891999999899988-278787666