HHsearch alignment for GI: 254781110 and conserved domain: cd01465
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.82 E-value=1.2e-18 Score=139.93 Aligned_cols=166 Identities=19% Similarity=0.210 Sum_probs=128.1
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS 270 (420)
Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 270 (420)
T Consensus 1 ldiv~vlD~SGSM~--------------------g~~~~~~k~a~~~~l~~l~~------~dr~~iv~F~~~~~~~~~~~ 54 (170)
T cd01465 1 LNLVFVIDRSGSMD--------------------GPKLPLVKSALKLLVDQLRP------DDRLAIVTYDGAAETVLPAT 54 (170)
T ss_pred CCEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHHCCC------CCEEEEEEECCCCEECCCCC
T ss_conf 91999990886889--------------------71999999999999985898------78799998358615515878
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC-
Q ss_conf 78--488999999864046788765388999999861310123345543347767787766624899606867777765-
Q gi|254781110|r 271 WG--TEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN- 347 (420)
Q Consensus 271 ~~--~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~- 347 (420)
T Consensus 55 ~~~~~~~~~~~i~---~l~~~G~T~~~~~l~~a~~~~~~~~----------------~~~~~~~iillTDG~~~~~~~~~ 115 (170)
T cd01465 55 PVRDKAAILAAID---RLTAGGSTAGGAGIQLGYQEAQKHF----------------VPGGVNRILLATDGDFNVGETDP 115 (170)
T ss_pred CHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHCC----------------CCCCCEEEEEEECCCCCCCCCCH
T ss_conf 6667999999874---3898998527799999999998633----------------78875069998158856798898
Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHH-HHCCCCCEEEECCHHHHHHHH
Q ss_conf 3489999999978987999995489778999998-621898279817989999999
Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPNGQRLLKT-CVSSPEYHYNVVNADSLIHVF 402 (420)
Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~-cas~~~~yf~a~~~~~L~~aF 402 (420)
T Consensus 116 ~~~~~~~~~~~~~~i~i~tiGiG~~~~~~-~L~~iA~~~~G~~~~v~~~~~l~~~f 170 (170)
T cd01465 116 DELARLVAQKRESGITLSTLGFGDNYNED-LMEAIADAGNGNTAYIDNLAEARKVF 170 (170)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCHH-HHHHHHHCCCCEEEECCCHHHHHHHC
T ss_conf 99999999987438862489808879999-99999975798899849999999639