HHsearch alignment for GI: 254781110 and conserved domain: cd01467
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.85 E-value=1.8e-19 Score=145.26 Aligned_cols=167 Identities=22% Similarity=0.253 Sum_probs=132.8
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS 270 (420)
Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 270 (420)
T Consensus 3 ~dvvlvlD~SgSM~~~d~~--------------~~~rl~~ak~~~~~~i~~~~-------~drvglv~Fs~~a~~~~plT 61 (180)
T cd01467 3 RDIMIALDVSGSMLAQDFV--------------KPSRLEAAKEVLSDFIDRRE-------NDRIGLVVFAGAAFTQAPLT 61 (180)
T ss_pred CEEEEEEECCCCCCCCCCC--------------CCCHHHHHHHHHHHHHHHCC-------CCEEEEEEECCCCEEECCCC
T ss_conf 2799999898475786667--------------85899999999999997199-------97599999728736733766
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf 78488999999864046788765388999999861310123345543347767787766624899606867777765348
Q gi|254781110|r 271 WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT 350 (420)
Q Consensus 271 ~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~ 350 (420)
T Consensus 62 ~d~~~~~~~l~~i~~~~~~ggT~i~~al~~a~~~l~~~~------------------~~~~~ivLlTDG~~n~g~~--~~ 121 (180)
T cd01467 62 LDRESLKELLEDIKIGLAGQGTAIGDAIGLAIKRLKNSE------------------AKERVIVLLTDGENNAGEI--DP 121 (180)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC------------------CCCCEEEEEECCCCCCCCC--CH
T ss_conf 568999999862244532368608999999999764247------------------6663799980588667876--99
Q ss_pred HHHHHHHHHCCCEEEEEEECCCC-----------CHHHHHHHHHCCCCCEEEECCHHHH
Q ss_conf 99999999789879999954897-----------7899999862189827981798999
Q gi|254781110|r 351 IKICDKAKENFIKIVTISINASP-----------NGQRLLKTCVSSPEYHYNVVNADSL 398 (420)
Q Consensus 351 ~~~c~~~k~~gi~i~tIgf~~~~-----------~~~~~l~~cas~~~~yf~a~~~~~L 398 (420)
T Consensus 122 ~~~~~~a~~~gi~v~tIGvG~~~~~~~~~~~~~~d~~~L~~iA~~tgG~yy~a~~~~eL 180 (180)
T cd01467 122 ATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKTGGRIFRALDGFEL 180 (180)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHC
T ss_conf 99999999769989999977898887688876559999999999619979972874649