HHsearch alignment for GI: 254781110 and conserved domain: cd01472

>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.51  E-value=2.9e-12  Score=98.37  Aligned_cols=159  Identities=19%  Similarity=0.259  Sum_probs=119.9

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r  191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS  270 (420)
Q Consensus       191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt  270 (420)
T Consensus         1 aDi~fvlD~S~Sv~--------------------~~~f~~~k~fi~~li~~~~i---~~~~~rvgvv~fs~~~~~~~~l~   57 (164)
T cd01472           1 ADIVFLVDGSESIG--------------------LSNFNLVKDFVKRVVERLDI---GPDGVRVGVVQYSDDPRTEFYLN   57 (164)
T ss_pred             CCEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEEECCCEEEEECCC
T ss_conf             97999997979988--------------------79999999999999996476---88860899998247415874454


Q ss_pred             C--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             7--84889999998640467887653889999998613101233455433477677877666248996068677777653
Q gi|254781110|r  271 W--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNV  348 (420)
Q Consensus       271 ~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~  348 (420)
T Consensus        58 ~~~~~~~l~~~i~~i~--~~~g~t~~~~AL~~~~~~~~~~~~-------------~~r~~~~kvvvllTDG~s~~-----  117 (164)
T cd01472          58 TYRSKDDVLEAVKNLR--YIGGGTNTGKALKYVRENLFTEAS-------------GSREGVPKVLVVITDGKSQD-----  117 (164)
T ss_pred             CCCCHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHCCCC-------------CCCCCCEEEEEEEECCCCCC-----
T ss_conf             6698899999998611--668975299999999998635357-------------87678515999983799864-----


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CCEEEECC
Q ss_conf             48999999997898799999548977899999862189--82798179
Q gi|254781110|r  349 NTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSP--EYHYNVVN  394 (420)
Q Consensus       349 ~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~--~~yf~a~~  394 (420)
T Consensus       118 ~~~~~a~~lr~~Gi~v~~VGig~-~~-~~~L~~iAs~p~~~~~~~~~~  163 (164)
T cd01472         118 DVEEPAVELKQAGIEVFAVGVKN-AD-EEELKQIASDPKELYVFNVAD  163 (164)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCC-CC-HHHHHHHHCCCCHHEEEECCC
T ss_conf             08899999998898899997884-79-999999967993783896588