HHsearch alignment for GI: 254781110 and conserved domain: cd01472
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.51 E-value=2.9e-12 Score=98.37 Aligned_cols=159 Identities=19% Similarity=0.259 Sum_probs=119.9
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS 270 (420)
Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 270 (420)
T Consensus 1 aDi~fvlD~S~Sv~--------------------~~~f~~~k~fi~~li~~~~i---~~~~~rvgvv~fs~~~~~~~~l~ 57 (164)
T cd01472 1 ADIVFLVDGSESIG--------------------LSNFNLVKDFVKRVVERLDI---GPDGVRVGVVQYSDDPRTEFYLN 57 (164)
T ss_pred CCEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEEECCCEEEEECCC
T ss_conf 97999997979988--------------------79999999999999996476---88860899998247415874454
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 7--84889999998640467887653889999998613101233455433477677877666248996068677777653
Q gi|254781110|r 271 W--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNV 348 (420)
Q Consensus 271 ~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~ 348 (420)
T Consensus 58 ~~~~~~~l~~~i~~i~--~~~g~t~~~~AL~~~~~~~~~~~~-------------~~r~~~~kvvvllTDG~s~~----- 117 (164)
T cd01472 58 TYRSKDDVLEAVKNLR--YIGGGTNTGKALKYVRENLFTEAS-------------GSREGVPKVLVVITDGKSQD----- 117 (164)
T ss_pred CCCCHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHCCCC-------------CCCCCCEEEEEEEECCCCCC-----
T ss_conf 6698899999998611--668975299999999998635357-------------87678515999983799864-----
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CCEEEECC
Q ss_conf 48999999997898799999548977899999862189--82798179
Q gi|254781110|r 349 NTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSP--EYHYNVVN 394 (420)
Q Consensus 349 ~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~--~~yf~a~~ 394 (420)
T Consensus 118 ~~~~~a~~lr~~Gi~v~~VGig~-~~-~~~L~~iAs~p~~~~~~~~~~ 163 (164)
T cd01472 118 DVEEPAVELKQAGIEVFAVGVKN-AD-EEELKQIASDPKELYVFNVAD 163 (164)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC-CC-HHHHHHHHCCCCHHEEEECCC
T ss_conf 08899999998898899997884-79-999999967993783896588