HHsearch alignment for GI: 254781110 and conserved domain: cd01476
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.34 E-value=6.6e-11 Score=89.54 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=109.8
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCC--C
Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124--4
Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNI--E 268 (420)
Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 268 (420)
T Consensus 1 lDl~fllD~S~Sv~---------------------~~f~~~k~F~~~lv~~f~---i~~~~~rVgvv~ys~~~~~~i~f~ 56 (163)
T cd01476 1 LDLLFVLDSSGSVR---------------------GKFEKYKKYIERIVEGLE---IGPTATRVALITYSGRGRQRVRFN 56 (163)
T ss_pred CCEEEEEECCCCHH---------------------HHHHHHHHHHHHHHHHHC---CCCCCEEEEEEEECCCCCEEEEEC
T ss_conf 92999991888866---------------------739999999999999614---688853899999669870788875
Q ss_pred CC--CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 57--7848899999986404678876538899999986131012334554334776778776662489960686777776
Q gi|254781110|r 269 PS--WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKS 346 (420)
Q Consensus 269 lt--~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~ 346 (420)
T Consensus 57 l~~~~~~~~l~~~I~~i~--~~~g~T~tg~AL~~a~~~~~~~~g--------------~R~~~~kv~vviTDG~s~d--- 117 (163)
T cd01476 57 LPKHNDGEELLEKVDNLR--FIGGTTATGAAIEVALQQLDPSEG--------------RREGIPKVVVVLTDGRSHD--- 117 (163)
T ss_pred CCCCCCHHHHHHHHHHEE--CCCCCCCHHHHHHHHHHHHHHHCC--------------CCCCCEEEEEEEECCCCCC---
T ss_conf 777799999999997520--368985489999999997214206--------------7899616999981898766---
Q ss_pred CCHHHHHHHHHHH-CCCEEEEEEECCCCC-HHHHHHHHHCCCCCEEE
Q ss_conf 5348999999997-898799999548977-89999986218982798
Q gi|254781110|r 347 NVNTIKICDKAKE-NFIKIVTISINASPN-GQRLLKTCVSSPEYHYN 391 (420)
Q Consensus 347 ~~~~~~~c~~~k~-~gi~i~tIgf~~~~~-~~~~l~~cas~~~~yf~ 391 (420)
T Consensus 118 --~~~~~a~~lr~~~gv~v~avgVG~~~~~d~~eL~~Ia~~~~~Vft 162 (163)
T cd01476 118 --DPEKQARILRAVPNIETFAVGTGDPGTVDTEELHSITGNEDHIFT 162 (163)
T ss_pred --CHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCC
T ss_conf --488999999970998999998388650159999986499725457