HHsearch alignment for GI: 254781110 and conserved domain: cd01477
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=98.95 E-value=1.2e-07 Score=68.25 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=113.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 443201221022324223357876666753467665306788999899998510---46787655430223204876431
Q gi|254781110|r 189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSI---DLLSHVKEDVYMGLIGYTTRVEK 265 (420)
Q Consensus 189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 265 (420)
T Consensus 18 LWLDVv~VVD~S~~mt~--------------------~gl~~V~~~I~s~f~~~t~iGt~~~~pr~TRVGlVTYn~~Atv 77 (193)
T cd01477 18 LWLDIVFVVDNSKGMTQ--------------------GGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATV 77 (193)
T ss_pred EEEEEEEEEECCCCCCC--------------------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEE
T ss_conf 23789999967876562--------------------1099999999999713540357889987338999996787459
Q ss_pred CCCCCC--CHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 244577--84889999998-640467887653889999998613101233455433477677877666248996068677
Q gi|254781110|r 266 NIEPSW--GTEKVRQYVTR-DMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENN 342 (420)
Q Consensus 266 ~~~lt~--~~~~~~~~i~~-~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~ 342 (420)
T Consensus 78 vAdLn~~~S~ddl~~~i~~~l~~vsss~~SyL~~GL~aA~~~l~~~~~-------------~~R~nykKVVIVyAs~y~~ 144 (193)
T cd01477 78 VADLNDLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKR-------------TSRENYKKVVIVFASDYND 144 (193)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC-------------CCCCCCCEEEEEEECCCCC
T ss_conf 863454565788999998875146666312799999999999983326-------------6424862799999502467
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHH--HHHHHHHCCCCCEE
Q ss_conf 7776534899999999789879999954897789--99998621898279
Q gi|254781110|r 343 NFKSNVNTIKICDKAKENFIKIVTISINASPNGQ--RLLKTCVSSPEYHY 390 (420)
Q Consensus 343 ~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~--~~l~~cas~~~~yf 390 (420)
T Consensus 145 ~g~--~dp~pvA~rLK~~Gv~IiTVa~~q~~~~~~~~~L~~IAS-pg~nF 191 (193)
T cd01477 145 EGS--NDPRPIAARLKSTGIAIITVAFTQDESSNLLDKLGKIAS-PGMNF 191 (193)
T ss_pred CCC--CCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCC-CCCCC
T ss_conf 898--886999999987697899998268875889998887579-98887