HHsearch alignment for GI: 254781110 and conserved domain: cd01481
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.43 E-value=3.3e-11 Score=91.49 Aligned_cols=161 Identities=12% Similarity=0.132 Sum_probs=116.3
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 20122102232422335787666675346766530678899989999851046787655430223204876431244577
Q gi|254781110|r 192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSW 271 (420)
Q Consensus 192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 271 (420)
T Consensus 2 DlvFllD~S~si~--------------------~~~F~~~k~Fv~~lv~~f~---i~~~~trVgvi~ys~~~~~~f~l~~ 58 (165)
T cd01481 2 DIVFLIDGSDNVG--------------------SGNFPAIRDFIERIVQSLD---VGPDKIRVAVVQFSDTPRPEFYLNT 58 (165)
T ss_pred CEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHC---CCCCCEEEEEEEECCCEEEEEECCC
T ss_conf 7899996889989--------------------8999999999999999604---6888627889998686479997677
Q ss_pred --CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf --848899999986404678876538899999986131012334554334776778776662489960686777776534
Q gi|254781110|r 272 --GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVN 349 (420)
Q Consensus 272 --~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~ 349 (420)
T Consensus 59 ~~~~~~l~~~I~~i~~~-~g~~t~tg~AL~~a~~~~f~~~~-----------g~R~r~~v~kvlvviTdG~s~d-----~ 121 (165)
T cd01481 59 HSTKADVLGAVRRLRLR-GGSQLNTGSALDYVVKNLFTKSA-----------GSRIEEGVPQFLVLITGGKSQD-----D 121 (165)
T ss_pred CCCHHHHHHHHHHHHCC-CCCCEEHHHHHHHHHHHHCCCCC-----------CCCCCCCCCEEEEEEECCCCCC-----H
T ss_conf 68999999999841045-89843699999999997167567-----------8875579986999984898853-----7
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECC
Q ss_conf 899999999789879999954897789999986218982798179
Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVN 394 (420)
Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~ 394 (420)
T Consensus 122 ~~~~a~~lr~~gV~i~aVGvg~-~~~-~eL~~IAs~p~~vf~~~~ 164 (165)
T cd01481 122 VERPAVALKRAGIVPFAIGARN-ADL-AELQQIAFDPSFVFQVSD 164 (165)
T ss_pred HHHHHHHHHHCCCEEEEEECCC-CCH-HHHHHHHCCCCCEEECCC
T ss_conf 8999999998897899996897-999-999998589877697389