HHsearch alignment for GI: 254781110 and conserved domain: cd01481

>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.43  E-value=3.3e-11  Score=91.49  Aligned_cols=161  Identities=12%  Similarity=0.132  Sum_probs=116.3

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             20122102232422335787666675346766530678899989999851046787655430223204876431244577
Q gi|254781110|r  192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSW  271 (420)
Q Consensus       192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~  271 (420)
T Consensus         2 DlvFllD~S~si~--------------------~~~F~~~k~Fv~~lv~~f~---i~~~~trVgvi~ys~~~~~~f~l~~   58 (165)
T cd01481           2 DIVFLIDGSDNVG--------------------SGNFPAIRDFIERIVQSLD---VGPDKIRVAVVQFSDTPRPEFYLNT   58 (165)
T ss_pred             CEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHC---CCCCCEEEEEEEECCCEEEEEECCC
T ss_conf             7899996889989--------------------8999999999999999604---6888627889998686479997677


Q ss_pred             --CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf             --848899999986404678876538899999986131012334554334776778776662489960686777776534
Q gi|254781110|r  272 --GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVN  349 (420)
Q Consensus       272 --~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~  349 (420)
T Consensus        59 ~~~~~~l~~~I~~i~~~-~g~~t~tg~AL~~a~~~~f~~~~-----------g~R~r~~v~kvlvviTdG~s~d-----~  121 (165)
T cd01481          59 HSTKADVLGAVRRLRLR-GGSQLNTGSALDYVVKNLFTKSA-----------GSRIEEGVPQFLVLITGGKSQD-----D  121 (165)
T ss_pred             CCCHHHHHHHHHHHHCC-CCCCEEHHHHHHHHHHHHCCCCC-----------CCCCCCCCCEEEEEEECCCCCC-----H
T ss_conf             68999999999841045-89843699999999997167567-----------8875579986999984898853-----7


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECC
Q ss_conf             899999999789879999954897789999986218982798179
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVN  394 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~  394 (420)
T Consensus       122 ~~~~a~~lr~~gV~i~aVGvg~-~~~-~eL~~IAs~p~~vf~~~~  164 (165)
T cd01481         122 VERPAVALKRAGIVPFAIGARN-ADL-AELQQIAFDPSFVFQVSD  164 (165)
T ss_pred             HHHHHHHHHHCCCEEEEEECCC-CCH-HHHHHHHCCCCCEEECCC
T ss_conf             8999999998897899996897-999-999998589877697389