HHsearch alignment for GI: 254781110 and conserved domain: cd01482
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.39 E-value=5.8e-11 Score=89.89 Aligned_cols=159 Identities=16% Similarity=0.197 Sum_probs=116.2
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS 270 (420)
Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 270 (420)
T Consensus 1 aDlvfllD~S~Si~--------------------~~~f~~~k~fi~~lv~~f~---i~~~~~rvgvv~ys~~~~~~~~l~ 57 (164)
T cd01482 1 ADIVFLVDGSWSIG--------------------RSNFNLVRSFLSSVVEAFE---IGPDGVQVGLVQYSDDPRTEFDLN 57 (164)
T ss_pred CCEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCC---CCCCCEEEEEEEECCCCEEEECCC
T ss_conf 97999996989988--------------------8999999999999999647---688862899999447512787343
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 7--84889999998640467887653889999998613101233455433477677877666248996068677777653
Q gi|254781110|r 271 W--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNV 348 (420)
Q Consensus 271 ~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~ 348 (420)
T Consensus 58 ~~~~~~~l~~~i~~i~--~~~g~t~~~~AL~~~~~~~f~~~~-------------g~R~~~~kvlvliTDG~s~d----- 117 (164)
T cd01482 58 AYTSKEDVLAAIKNLP--YKGGNTRTGKALTHVREKNFTPDA-------------GARPGVPKVVILITDGKSQD----- 117 (164)
T ss_pred CCCCHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHCHHC-------------CCCCCCCEEEEEECCCCCCC-----
T ss_conf 4699899999986402--668997289999999998615002-------------89888860799960798843-----
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CCEEEECC
Q ss_conf 48999999997898799999548977899999862189--82798179
Q gi|254781110|r 349 NTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSP--EYHYNVVN 394 (420)
Q Consensus 349 ~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~--~~yf~a~~ 394 (420)
T Consensus 118 ~~~~~a~~lr~~gv~i~~VGVg~-~~-~~eL~~IAs~P~~~hvf~~~~ 163 (164)
T cd01482 118 DVELPARVLRNLGVNVFAVGVKD-AD-ESELKMIASKPSETHVFNVAD 163 (164)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC-CC-HHHHHHHHCCCCHHCEEECCC
T ss_conf 38999999998893899997883-78-999999968985661797479