HHsearch alignment for GI: 254781110 and conserved domain: pfam04056
>pfam04056 Ssl1 Ssl1-like. Ssl1-like proteins are 40kDa subunits of the Transcription factor II H complex.
Probab=97.41 E-value=0.011 Score=36.14 Aligned_cols=174 Identities=14% Similarity=0.093 Sum_probs=124.9
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC-CCCCCCCCCCC
Q ss_conf 20122102232422335787666675346766530678899989999851046787655430223204-87643124457
Q gi|254781110|r 192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGY-TTRVEKNIEPS 270 (420)
Q Consensus 192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lt 270 (420)
T Consensus 54 hl~iilD~S~aM~e~D---------------lkP~R~~~~l~~l~~Fi~efFdqNPiS---Qlgii~~rn~~a~~ls~ls 115 (250)
T pfam04056 54 HLYIVLDCSRAMEEKD---------------LRPSRFACTIKYLETFVEEFFDQNPIS---QIGLITCKDGRAHRLTDLT 115 (250)
T ss_pred EEEEEEECCHHHHHCC---------------CCCCHHHHHHHHHHHHHHHHHHCCCCC---CEEEEEEECCEEEEEEECC
T ss_conf 8999998827676351---------------586489999999999999987439830---2279999657137833257
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf 78488999999864046788765388999999861310123345543347767787766624899606867777765348
Q gi|254781110|r 271 WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT 350 (420)
Q Consensus 271 ~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~ 350 (420)
T Consensus 116 gnp~~hi~aL~~~~~~~~~G~pSLqN~Le~a~~~L~~~----------------P~~~sREILii~g-SL~T~DPg--dI 176 (250)
T pfam04056 116 GNPRVHIKALKSLREAECGGDPSLQNALELARASLKHV----------------PSHGSREVLIIFG-SLSTCDPG--DI 176 (250)
T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC----------------CCCCCEEEEEEEE-ECCCCCCC--CH
T ss_conf 99899999999874069999920899999999887508----------------9878548999982-04445886--59
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHH
Q ss_conf 999999997898799999548977899999862189827981798999999999
Q gi|254781110|r 351 IKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQN 404 (420)
Q Consensus 351 ~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~~aF~~ 404 (420)
T Consensus 177 ~~tI~~l~~~~IrvsvI~LaaE--v~Ick~l~~~T~G~y~V~lde~Hfk~ll~~ 228 (250)
T pfam04056 177 YSTIDTLKKEKIRCSVIGLSAE--VFICKELCKATNGTYSVALDETHLKELLLE 228 (250)
T ss_pred HHHHHHHHHCCCEEEEEEECHH--HHHHHHHHHHHCCEEEEECCHHHHHHHHHH
T ss_conf 9999999975907999873389--999999999749988875699999999995