HHsearch alignment of GI: 254781110 and MMDB domain: 1jey_B_1-236_463-505
>1jey_B (B:1-236,B:463-505) KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens}
Probab=99.40 E-value=2.6e-11 Score=91.73 Aligned_cols=185 Identities=10% Similarity=0.000 Sum_probs=123.0
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS 270 (420)
Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 270 (420)
.++.+++|+|+||...... ..+|++.++.++..++..+... ....+++++.|++........+
T Consensus 8 ~~ivlviD~SgSM~~~~~~--------------~~tr~~~ak~a~~~li~~~~~~---~~~d~vgiv~F~~~~~~~~~~~ 70 (279)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPG--------------IESPFEQAKKVITMFVQRQVFA---ENKDEIALVLFGTDGTDNPLSG 70 (279)
T ss_dssp EEEEEEEECCGGGGCCBTT--------------BCCHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESCSSCBSTTCT
T ss_pred CEEEEEEECCHHHCCCCCC--------------CCCHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEECCCCCCCCCCC
T ss_conf 6399999898677677889--------------9997999999999999987238---9998799999834788875555
Q ss_pred --------------CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf --------------784889999998640467887653889999998613101233455433477677877666248996
Q gi|254781110|r 271 --------------WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFL 336 (420)
Q Consensus 271 --------------~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~ 336 (420)
....+....+.... ...+|+|+...||..+...|..... ..+..+++||++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~T~~~~aL~~A~~~l~~~~~--------------~~~~~~~~Iili 135 (279)
T 1jey_B 71 GDQYQNITVHRHLMLPDFDLLEDIESKI-QPGSQQADFLDALIVSMDVIQHETI--------------GKKFEKRHIEIF 135 (279)
T ss_dssp TTCSTTEEEEEEEECCCHHHHHHHHTTC-CCCSSCCCHHHHHHHHHHHHHHHSS--------------SSCCSEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHHHH--------------CCCCCCEEEEEE
T ss_conf 5675654985558998999999998644-6887787879999999999998750--------------465454389998
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHH-----HHHHHC-CCCCEEEECCHHHHHHHHHHHHHHH
Q ss_conf 068677777653489999999978987999995489778999-----998621-8982798179899999999999874
Q gi|254781110|r 337 TDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPNGQRL-----LKTCVS-SPEYHYNVVNADSLIHVFQNISQLM 409 (420)
Q Consensus 337 TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~-----l~~cas-~~~~yf~a~~~~~L~~aF~~Ia~~I 409 (420)
|||.++.... ....+++.+|+.||+||+||++........ +..++. +++.+|.+...+++...++.|.+-+
T Consensus 136 TDG~~~~~~~--~~~~~~~~l~~~~i~i~~Igig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 212 (279)
T 1jey_B 136 TDLSSRFSKS--QLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVM 212 (279)
T ss_dssp CCCCSCCCCT--THHHHHHHHHHTTEEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHH
T ss_pred ECCCCCCCHH--HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 0799886878--9999999998659659996146665354664233302331124554312343211233200112100