HHsearch alignment of GI: 254781110 and MMDB domain: 1yvr_A_365-538
>1yvr_A (A:365-538) RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis}
Probab=99.13 E-value=2.7e-09 Score=78.59 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=101.7
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 44320122102232422335787666675346766530678899989999851046787655430223204876431244
Q gi|254781110|r 189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIE 268 (420)
Q Consensus 189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (420)
...++.+++|.|+||.....+. +...+..+...+.... ....+++++.|++......+
T Consensus 3 ~~~~vv~liD~SgSM~~~~~~~----------------~~~~~~~~~~~~~~~~------~~~~~v~li~F~~~~~~~~~ 60 (174)
T 1yvr_A 3 TGKRFLLAIDVSASMNQRVLGS----------------ILNASVVAAAMCMLVA------RTEKDSHMVAFSDEMLPCPI 60 (174)
T ss_dssp CCCCEEEEEECSGGGGSBSTTS----------------SCBHHHHHHHHHHHHH------HHCSSEEEEEESSSEECCSC
T ss_pred CCCEEEEEEECCCCCCCCCCCC----------------CCCHHHHHHHHHHHHH------HHCCCCEEEEECCCEEECCC
T ss_conf 7861799997755542850077----------------7369999999999987------42599779997696587899
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC-
Q ss_conf 5778488999999864046788765388999999861310123345543347767787766624899606867777765-
Q gi|254781110|r 269 PSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN- 347 (420)
Q Consensus 269 lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~- 347 (420)
++.+.-... +..+ ...+.|+|++..+|.++.+.+.. ++.+|++|||+.+.....
T Consensus 61 ~~~~~~~~~--~~~l-~~~~~g~T~~~~al~~a~~~~~~----------------------~~~ii~iTDG~~~~~~~~~ 115 (174)
T 1yvr_A 61 TVNMLLHEV--VEKM-SDITMGSTDCALPMLWAQKTNTA----------------------ADIFIVFTDCETNVEDVHP 115 (174)
T ss_dssp CTTSCHHHH--HHHH-TTCCCSCCCTTHHHHHHHHTTCC----------------------CSEEEEEECCCCCSSSCCH
T ss_pred CCCCHHHHH--HHHH-HCCCCCCCHHHHHHHHHHHCCCC----------------------CCEEEEECCCCCCCCCCCH
T ss_conf 865409999--9998-53678983599999999962656----------------------8889997179867898899
Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 348999999997898799999548977
Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPN 374 (420)
Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~ 374 (420)
......++.++..+|.+|+||++.+..
T Consensus 116 ~~~~~~~~~~~~~~v~~~~vg~g~~~~ 142 (174)
T 1yvr_A 116 ATALKQYREKMGIPAKLIVCAMTSNGF 142 (174)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSSSSE
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 999999999848997499997668887