HHsearch alignment of GI: 254781110 and MMDB domain: 2nvo_A_53-64_359-535
>2nvo_A (A:53-64,A:359-535) RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.99 E-value=1.4e-08 Score=74.04 Aligned_cols=143 Identities=14% Similarity=0.051 Sum_probs=101.2
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312
Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420)
Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420)
.+...++.+++|.|+||...... ..|....+.....+..... ....+++++.|++.....
T Consensus 13 ~~~~~~iv~vlD~SgSM~~~~~~---------------~~k~~~~~~~a~~~~~~~~-----~~~~~v~li~F~~~~~~~ 72 (189)
T 2nvo_A 13 QPANTRHLLALDVSGSMTCGDVA---------------GVPGLTPNMAAAAMSLIAL-----RTEPDALTMGFAEQFRPL 72 (189)
T ss_dssp CCCCSEEEEEECCSGGGGSCCGG---------------GCTTCCHHHHHHHHHHHHH-----HHSSEEEEEEEBSSEEEC
T ss_pred CCCCCCEEEEEECHHHCCCCCCC---------------CCCHHHHHHHHHHHHHHHH-----CCCCCCEEEEECCCCEEC
T ss_conf 88787179999773420464005---------------8731879999999999980-----758981799878951775
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 44577848899999986404678876538899999986131012334554334776778776662489960686777776
Q gi|254781110|r 267 IEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKS 346 (420)
Q Consensus 267 ~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~ 346 (420)
.+++.+.... ........+.|+|+...++..+.+.+.. ++.++++|||+.+....
T Consensus 73 ~~~~~~~~~~---~~~~~~~~~~g~T~~~~al~~a~~~~~~----------------------~~~vilitDg~~~~~~~ 127 (189)
T 2nvo_A 73 GITPRDTLES---AMQKAQSVSFGGTDCAQPILWAAQERLD----------------------VDTFVVYTDNETWAGQV 127 (189)
T ss_dssp CCCTTCCHHH---HHHHTCCSSBCCCCTTHHHHHHHHTTCC----------------------CSEEEEEESSCCCCCSS
T ss_pred CCCCCCHHHH---HHHHHHCCCCCCCHHHHHHHHHHHCCCC----------------------CCEEEEECCCCCCCCCC
T ss_conf 8888732999---9999854578985699999999846455----------------------89899980799778999
Q ss_pred CC-HHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 53-48999999997898799999548977
Q gi|254781110|r 347 NV-NTIKICDKAKENFIKIVTISINASPN 374 (420)
Q Consensus 347 ~~-~~~~~c~~~k~~gi~i~tIgf~~~~~ 374 (420)
+. ......+.++..++++++|+++.+..
T Consensus 128 ~~~~~~~~~~~~~~~~i~i~~i~~~~~~~ 156 (189)
T 2nvo_A 128 HPTVALDQYAQKMGRAPKLIVVGLTATEF 156 (189)
T ss_dssp CHHHHHHHHHHHHSCCCEEEEEETTCSCC
T ss_pred CHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 99999999998528997599998038888