HHsearch alignment of GI: 254781110 and MMDB domain: 2ww8_A_221-279_318-447_506-585
>2ww8_A (A:221-279,A:318-447,A:506-585) RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=99.93 E-value=7.5e-25 Score=179.89 Aligned_cols=186 Identities=16% Similarity=0.153 Sum_probs=141.1
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 44320122102232422335787666675346766530678899989999851046787655430223204876431244
Q gi|254781110|r 189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIE 268 (420)
Q Consensus 189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (420)
...++.+++|.|+||...... ..+|++.++.+...+++.+...+ ..+++++.|++.......
T Consensus 3 ~~~~i~~viD~S~SM~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~----~~~v~lv~f~~~~~~~~~ 64 (269)
T 2ww8_A 3 VPLDVVILLDNSNSMSNIRNK--------------NARRAERAGEATRSLIDKITSDS----ENRVALVTYASTIDYSYL 64 (269)
T ss_dssp CCEEEEEEEECCGGGCTTHHH--------------HCCHHHHHHHHHHHHHHHHHTST----TCEEEEEEESSSBBCCEE
T ss_pred CCCCEEEEECCCCCCCCCCCC--------------CCEEEEECCCCEEEEEEEEEECC----CCEEEEEEECCCCCCCEE
T ss_conf 245579996146630001346--------------53056522645046425777537----860578840231042025
Q ss_pred CCCCHHHHHHHHH-----------HHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 5778488999999-----------86404678876538899999986131012334554334776778776662489960
Q gi|254781110|r 269 PSWGTEKVRQYVT-----------RDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLT 337 (420)
Q Consensus 269 lt~~~~~~~~~i~-----------~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~T 337 (420)
...........+. .+....++|+|+++.||.|+++.+.+.+ ....+|++||||
T Consensus 65 ~~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~GgT~~~~AL~~a~~~l~~~~----------------~~~~~kvIiliT 128 (269)
T 2ww8_A 65 KLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQA----------------RQNSQKVIFHIT 128 (269)
T ss_dssp EEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHS----------------CSSSEEEEEEEE
T ss_pred EEEECCCCEEEECCEEEEEECCCCCCCEEECCCCEEEEEECCCCCEEEEECC----------------CCCCCEEEEECC
T ss_conf 5541254113303101232102456410101462466530022414776215----------------776520478615
Q ss_pred CCCCCCCCC---------------------------------------------------------------CCHHHHHH
Q ss_conf 686777776---------------------------------------------------------------53489999
Q gi|254781110|r 338 DGENNNFKS---------------------------------------------------------------NVNTIKIC 354 (420)
Q Consensus 338 DG~~~~~~~---------------------------------------------------------------~~~~~~~c 354 (420)
||.++.... +..+..+|
T Consensus 129 DG~~~~~~~~~~~~~~~~~~~~v~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 208 (269)
T 2ww8_A 129 DGVPTMSYPINFNHATFAPSYQNQLNAFFSKSPNKDGILLSDFITQATSGEHTIVRGDGQSNSNTAKITNHGDPTRWYYN 208 (269)
T ss_dssp SSCCSEECCBCCCCSTTCCCHHHHHHHHHHTSTTSSSCCGGGBCCCCTTCGGGTCEECSSCTCSSCCBCBSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCCEEEECCCEEEEEECCCCCEEEECCEEEEECCCCCEEECCCCEECCCCEEEEECCCCEEEEEE
T ss_conf 66310000013445410047631310566511211206611101231012210203774275320576204743057887
Q ss_pred HHHHHCCCEEEEEEECCCCC-------HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf 99997898799999548977-------8999998621898279817989999999999987420
Q gi|254781110|r 355 DKAKENFIKIVTISINASPN-------GQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVH 411 (420)
Q Consensus 355 ~~~k~~gi~i~tIgf~~~~~-------~~~~l~~cas~~~~yf~a~~~~~L~~aF~~Ia~~I~~ 411 (420)
+++|++||+||||||+.+.+ ++++|+.|||+|+|||+|+ ||.++|+.|+++|-+
T Consensus 209 ~~~k~~~i~i~ti~~~~~~~~~~~~~~~~~~l~~cas~~~~y~~~~---~~~~~f~~ia~~~~~ 269 (269)
T 2ww8_A 209 GNIAPDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENYTNVT---DTTKILEQLNRYFHT 269 (269)
T ss_dssp HHTGGGCCEEEEEEESCCCTTTSCHHHHHHHHHHTSSSGGGEEEES---SGGGHHHHHHHHHTT
T ss_pred EECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEC---CCCCEECCCCCCCEE
T ss_conf 5204676303577677156421002343057756611665326405---665111133554127