HHsearch alignment of GI: 254781110 and MMDB domain: 3eh1_A_155-399
>3eh1_A (A:155-399) Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=92.08 E-value=0.71 Score=23.81 Aligned_cols=158 Identities=9% Similarity=0.086 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCC-----------------------------CCCCCCCHHHHHH
Q ss_conf 78899989999851046787655430223204876431-----------------------------2445778488999
Q gi|254781110|r 228 MAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEK-----------------------------NIEPSWGTEKVRQ 278 (420)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~lt~~~~~~~~ 278 (420)
+..+.+++...++.+.. ..+.++++++|++.... ..++......+..
T Consensus 25 l~~~~~~i~~~l~~l~~----~~~~~igiitf~~~V~~y~~~~~~~~~~~~v~~d~~~~~~p~~~~~l~~~~~~~~~i~~ 100 (245)
T 3eh1_A 25 LTILCQSLLENLDKLPG----DSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKD 100 (245)
T ss_dssp HHHHHHHHHHHTTTSSC----CTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGGGTSEETTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC----CCCEEEEEEEECCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHHHH
T ss_conf 99999999999862568----88608999997987999845898775337862486433567876578507998999999
Q ss_pred HHHHHHHCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC----------
Q ss_conf 9998640467---887653889999998613101233455433477677877666248996068677777----------
Q gi|254781110|r 279 YVTRDMDSLI---LKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK---------- 345 (420)
Q Consensus 279 ~i~~~~~~~~---~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~---------- 345 (420)
.++.+..... ..++..+.++..+...|.+.. -.++++++|-.|.+.
T Consensus 101 ~L~~l~~~~~~~~~~~~c~g~Al~~a~~ll~~~g---------------------GkIi~f~~g~p~~G~G~l~~~~~~~ 159 (245)
T 3eh1_A 101 LLNALPNMFTNTRETHSALGPALQAAFKLMSPTG---------------------GRVSVFQTQLPSLGAGLLQSREDPN 159 (245)
T ss_dssp HHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTTC---------------------EEEEEEECSCCCSSTTCCCCCCCSC
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC---------------------CEEEEEECCCCCCCCCEEECCCCCC
T ss_conf 9985344335877763109999999999888439---------------------8799994689977897233366755
Q ss_pred -------------CCCHHHHHHHHHHHCCCEEEEEEECCCCCH-HHHHHHHHCCCCCEEEECC------HHHHHHHHHHH
Q ss_conf -------------653489999999978987999995489778-9999986218982798179------89999999999
Q gi|254781110|r 346 -------------SNVNTIKICDKAKENFIKIVTISINASPNG-QRLLKTCVSSPEYHYNVVN------ADSLIHVFQNI 405 (420)
Q Consensus 346 -------------~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~-~~~l~~cas~~~~yf~a~~------~~~L~~aF~~I 405 (420)
...--+.++..+..+||.|....++...-. ..+-.-|--++|..|..++ ..++...++++
T Consensus 160 ~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~~~~~~dl~tl~~l~~~TgG~i~~y~~f~~~~~~~~~~~l~~dl 239 (245)
T 3eh1_A 160 QRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDL 239 (245)
T ss_dssp GGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 56863466543247799999999999759669999954876784989989985784599806755212657899999999
Q ss_pred HHHHH
Q ss_conf 98742
Q gi|254781110|r 406 SQLMV 410 (420)
Q Consensus 406 a~~I~ 410 (420)
.+.++
T Consensus 240 ~~~l~ 244 (245)
T 3eh1_A 240 KRYLT 244 (245)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99865