HHsearch results for GI: 254781110 and protein with PDBid: 1jey_B
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.93 E-value=0.00053 Score=43.19 Aligned_cols=146 Identities=11% Similarity=0.054 Sum_probs=91.6
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC-------
Q ss_conf 2012210223242233578766667534676653067889998999985104678765543022320487643-------
Q gi|254781110|r 192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE------- 264 (420)
Q Consensus 192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 264 (420)
-+.+++|++++|.....+ ..++++.++.++..++...-... ...++|++.|++...
T Consensus 9 aiv~~iDvs~sM~~~~~~--------------~~s~~~~a~~~~~~~~~~ki~~~---~~D~vglvlfgt~~t~N~l~~~ 71 (565)
T 1jey_B 9 AVVLCMDVGFTMSNSIPG--------------IESPFEQAKKVITMFVQRQVFAE---NKDEIALVLFGTDGTDNPLSGG 71 (565)
T ss_dssp EEEEEEECCGGGGCCBTT--------------BCCHHHHHHHHHHHHHHHHHHTT---CCCEEEEEEESCSSCBSTTCTT
T ss_pred EEEEEEECCHHHCCCCCC--------------CCCHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCCCCCCCCC
T ss_conf 199999898677676889--------------99979999999999999873389---9987999998057888755544
Q ss_pred -------CCCCCCC-CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf -------1244577-84889999998640467887653889999998613101233455433477677877666248996
Q gi|254781110|r 265 -------KNIEPSW-GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFL 336 (420)
Q Consensus 265 -------~~~~lt~-~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~ 336 (420)
...++.. +...++. +..+. ....+.++...+|.++..+|...... ....++.||++
T Consensus 72 ~~~~~i~v~~~l~~~~~~~l~~-l~~~~-~~~~~~~d~~~aL~va~~~l~~~~~~--------------~k~~~~~Ivl~ 135 (565)
T 1jey_B 72 DQYQNITVHRHLMLPDFDLLED-IESKI-QPGSQQADFLDALIVSMDVIQHETIG--------------KKFEKRHIEIF 135 (565)
T ss_dssp TCSTTEEEEEEEECCCHHHHHH-HHTTC-CCCSSCCCHHHHHHHHHHHHHHHSSS--------------SCCSEEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHH-HHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHC--------------CCCCCEEEEEE
T ss_conf 5777559974588999999999-98653-68877878799999999999987502--------------55562489999
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 068677777653489999999978987999995489
Q gi|254781110|r 337 TDGENNNFKSNVNTIKICDKAKENFIKIVTISINAS 372 (420)
Q Consensus 337 TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~ 372 (420)
|||...... .....+.+.+++.+|.+..|++...
T Consensus 136 Td~~~p~~~--~~~~~i~~~l~~~~i~L~vi~~~~~ 169 (565)
T 1jey_B 136 TDLSSRFSK--SQLDIIIHSLKKCDISLQFFLPFSL 169 (565)
T ss_dssp CCCCSCCCC--TTHHHHHHHHHHTTEEEEEEESSCC
T ss_pred ECCCCCCCH--HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 279988687--8999999999865966999703666