HHsearch results for GI: 254781110 and protein with PDBid: 1mf7_A
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=99.49 E-value=1.8e-13 Score=104.76 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=129.3
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420)
Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420)
..|+.|++|.|++|. ...+...+..+..++..+. ....|++++.|++......+|
T Consensus 5 ~~DivfvlD~S~s~~--------------------~~~f~~~k~~i~~~i~~l~-----~~~~rvgvv~f~~~~~~~~~l 59 (194)
T 1mf7_A 5 DSDIAFLIDGSGSII--------------------PHDFRRMKEFVSTVMEQLK-----KSKTLFSLMQYSEEFRIHFTF 59 (194)
T ss_dssp CEEEEEEEECCTTSC--------------------HHHHHHHHHHHHHHHHHHC-----CTTEEEEEEEESSSEEEEECH
T ss_pred CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCC-----CCCCEEEEEEEEEEEEEEECC
T ss_conf 717999995989988--------------------7999999999999999719-----888089999965403775114
Q ss_pred CCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 778--488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r 270 SWG--TEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420)
Q Consensus 270 t~~--~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420)
+.. ...+.+.++.+. ..+|+|+...++.++.+.+..... ...+..+|++|++|||..+....
T Consensus 60 ~~~~~~~~~~~~i~~l~--~~~g~t~~~~al~~a~~~~~~~~~-------------~~~~~~~kvvvl~tDG~~~~~~~- 123 (194)
T 1mf7_A 60 KEFQNNPNPRSLVKPIT--QLLGRTHTATGIRKVVRELFNITN-------------GARKNAFKILVVITDGEKFGDPL- 123 (194)
T ss_dssp HHHHHSCCHHHHHTTCC--CCCSCBCHHHHHHHHHHTTTSGGG-------------TCCTTSEEEEEEEESSCCBSCSS-
T ss_pred CCCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHC-------------CCCCCCCEEEEEEECCCCCCCHH-
T ss_conf 66366899998764134--236986699999999998741432-------------67677664999994788789804-
Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf 348999999997898799999548977---899999862189--8279817989999999999987420
Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPN---GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVH 411 (420)
Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~---~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~ 411 (420)
.+......+|..||+||+||++.... ....|+.+|+.| .++|.+++.++|.+.++.|.+.|-.
T Consensus 124 -~~~~~~~~l~~~gv~v~~Vgi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~i~~ 191 (194)
T 1mf7_A 124 -GYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC 191 (194)
T ss_dssp -CGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT
T ss_pred -HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf -49999999997799999999788766634699999986699866089949999999999999876414