HHsearch results for GI: 254781110 and protein with PDBid: 1mjn_A
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.12 E-value=4.4e-10 Score=82.75 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=119.5
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420)
Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420)
..|+.|++|.|+||. ..+++..+..+..+++.+.. ...++++..|+.......++
T Consensus 2 ~~DivfllD~S~Sm~--------------------~~~f~~~k~~~~~~i~~l~~-----~~~~~~v~~~~~~~~~~~~~ 56 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQ--------------------PDEFQKILDFMKDVMKKCSN-----TSYQFAAVQFSTSYKTEFDF 56 (179)
T ss_dssp CEEEEEEEECBTTCC--------------------HHHHHHHHHHHHHHHHHTTT-----SSEEEEEEEESSSEEEEECH
T ss_pred CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEEEECCEECCCC
T ss_conf 769999996889998--------------------79999999999999997375-----77669999986021111352
Q ss_pred CCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 778--488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r 270 SWG--TEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420)
Q Consensus 270 t~~--~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420)
... .......+..+ ....|+|+...++.++...+...... ..+..+|++|++|||+.+.....
T Consensus 57 ~~~~~~~~~~~~i~~~--~~~~g~~~~~~al~~a~~~~~~~~~~-------------~r~~~~k~ivllTDG~~~~~~~~ 121 (179)
T 1mjn_A 57 SDYVKRKDPDALLKHV--KHMLLLTNTFGAINYVATEVFREELG-------------ARPDATKVLIIITDGEATDSGNI 121 (179)
T ss_dssp HHHHHHCCHHHHHTTC--CCCCBCCCHHHHHHHHHHHTSSGGGT-------------CCTTSEEEEEEEESSCCSSCSCC
T ss_pred CCCCCHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHC-------------CCCCCCEEEEEECCCCCCCCHHH
T ss_conf 1204699999987512--55789832788999999998545306-------------89987148999807998860689
Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHH
Q ss_conf 348999999997898799999548977---899999862189--82798179899999999999874
Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPN---GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLM 409 (420)
Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~---~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I 409 (420)
.+..++.++.++++.... ....|+..|+.| .|+|.+++-++|.+.+++|.++|
T Consensus 122 ---------~~~~~~~~~~~~i~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~I 179 (179)
T 1mjn_A 122 ---------DAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI 179 (179)
T ss_dssp ---------GGGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHHHHHC
T ss_pred ---------HHHHCCEEEEEEEEECCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf ---------9982986889999946886017999999857998633998799999999999997249