HHsearch results for GI: 254781110 and protein with PDBid: 1mjn_A

>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.12  E-value=4.4e-10  Score=82.75  Aligned_cols=171  Identities=13%  Similarity=0.108  Sum_probs=119.5

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      ..|+.|++|.|+||.                    ..+++..+..+..+++.+..     ...++++..|+.......++
T Consensus         2 ~~DivfllD~S~Sm~--------------------~~~f~~~k~~~~~~i~~l~~-----~~~~~~v~~~~~~~~~~~~~   56 (179)
T 1mjn_A            2 NVDLVFLFDGSMSLQ--------------------PDEFQKILDFMKDVMKKCSN-----TSYQFAAVQFSTSYKTEFDF   56 (179)
T ss_dssp             CEEEEEEEECBTTCC--------------------HHHHHHHHHHHHHHHHHTTT-----SSEEEEEEEESSSEEEEECH
T ss_pred             CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEEEECCEECCCC
T ss_conf             769999996889998--------------------79999999999999997375-----77669999986021111352


Q ss_pred             CCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             778--488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r  270 SWG--TEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN  347 (420)
Q Consensus       270 t~~--~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~  347 (420)
                      ...  .......+..+  ....|+|+...++.++...+......             ..+..+|++|++|||+.+.....
T Consensus        57 ~~~~~~~~~~~~i~~~--~~~~g~~~~~~al~~a~~~~~~~~~~-------------~r~~~~k~ivllTDG~~~~~~~~  121 (179)
T 1mjn_A           57 SDYVKRKDPDALLKHV--KHMLLLTNTFGAINYVATEVFREELG-------------ARPDATKVLIIITDGEATDSGNI  121 (179)
T ss_dssp             HHHHHHCCHHHHHTTC--CCCCBCCCHHHHHHHHHHHTSSGGGT-------------CCTTSEEEEEEEESSCCSSCSCC
T ss_pred             CCCCCHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHC-------------CCCCCCEEEEEECCCCCCCCHHH
T ss_conf             1204699999987512--55789832788999999998545306-------------89987148999807998860689


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHH
Q ss_conf             348999999997898799999548977---899999862189--82798179899999999999874
Q gi|254781110|r  348 VNTIKICDKAKENFIKIVTISINASPN---GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLM  409 (420)
Q Consensus       348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~---~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I  409 (420)
                               .+..++.++.++++....   ....|+..|+.|  .|+|.+++-++|.+.+++|.++|
T Consensus       122 ---------~~~~~~~~~~~~i~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~I  179 (179)
T 1mjn_A          122 ---------DAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI  179 (179)
T ss_dssp             ---------GGGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHHHHHC
T ss_pred             ---------HHHHCCEEEEEEEEECCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf             ---------9982986889999946886017999999857998633998799999999999997249