HHsearch results for GI: 254781110 and protein with PDBid: 1n3y_A
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.51 E-value=2.1e-13 Score=104.41 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=131.3
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312
Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420)
Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420)
.+...|+.|++|.|+||.. ..+...+..+..+++.+. ....|++++.|++.....
T Consensus 6 ~~~~~DivfvlD~S~Sm~~--------------------~~~~~~k~~i~~li~~l~-----~~~~rv~vv~f~~~~~~~ 60 (198)
T 1n3y_A 6 SRQEQDIVFLIDGSGSISS--------------------RNFATMMNFVRAVISQFQ-----RPSTQFSLMQFSNKFQTH 60 (198)
T ss_dssp --CCEEEEEEEECCTTSCH--------------------HHHHHHHHHHHHHHTTSC-----TTTEEEEEEEESSSEEEE
T ss_pred CCCCCCEEEEEECCCCCCH--------------------HHHHHHHHHHHHHHHHHC-----CCCCEEEEEEEECCEEEE
T ss_conf 6888648999968799887--------------------999999999999999708-----998589999983432341
Q ss_pred CCCCCCHH--HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 44577848--8999999864046788765388999999861310123345543347767787766624899606867777
Q gi|254781110|r 267 IEPSWGTE--KVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF 344 (420)
Q Consensus 267 ~~lt~~~~--~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~ 344 (420)
.+|+...+ .+...++.+ .+.+|+|+...++.++...+..... ...+..+|++||+|||..+..
T Consensus 61 ~~l~~~~~~~~~~~~i~~~--~~~~~~t~~~~al~~a~~~~~~~~~-------------~~r~~~~kvivlltDG~~~~~ 125 (198)
T 1n3y_A 61 FTFEEFRRSSNPLSLLASV--HQLQGFTYTATAIQNVVHRLFHASY-------------GARRDAAKILIVITDGKKEGD 125 (198)
T ss_dssp ECHHHHHHCSSGGGGGTTC--CCCCSCBCHHHHHHHHHTTTTSGGG-------------TCCTTSEEEEEEEESSCCBSC
T ss_pred CCCCCCCCHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHC-------------CCCCCCCCEEEEEECCCCCCC
T ss_conf 2666643389999988765--4036987388999999999842320-------------577876425999935898887
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECCCC---CHHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCC
Q ss_conf 76534899999999789879999954897---7899999862189--82798179899999999999874202
Q gi|254781110|r 345 KSNVNTIKICDKAKENFIKIVTISINASP---NGQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHR 412 (420)
Q Consensus 345 ~~~~~~~~~c~~~k~~gi~i~tIgf~~~~---~~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~l 412 (420)
. ......++.+|..||+||+||++... .....|+.+|+.| .++|.+++.++|.+.++.|.+.|--+
T Consensus 126 ~--~~~~~~~~~~~~~gv~i~~Ig~g~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~i~~~l~~~ic~~ 196 (198)
T 1n3y_A 126 S--LDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAI 196 (198)
T ss_dssp S--SCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHTC
T ss_pred C--CCHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 2--0599999999978988999997876677534999999866998651999299999999999999873167