HHsearch results for GI: 254781110 and protein with PDBid: 1pt6_A
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.59 E-value=5.4e-14 Score=108.25 Aligned_cols=183 Identities=19% Similarity=0.219 Sum_probs=133.6
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420)
Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420)
..|+.|++|.|+||. .++..+..+..+++.+. ..+...|++++.|++......+|
T Consensus 7 ~~DivfvlD~S~S~~----------------------~f~~~k~f~~~~i~~~~---~~~~~~rv~vv~y~~~~~~~~~l 61 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY----------------------PWDSVTAFLNDLLKRMD---IGPKQTQVGIVQYGENVTHEFNL 61 (213)
T ss_dssp CEEEEEEEECCTTCC----------------------CHHHHHHHHHHHHTTSC---BSTTSBEEEEEEESSSEEEEECT
T ss_pred CEEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHHC---CCCCCCEEEEEEEEEEEEEEECC
T ss_conf 448999997988887----------------------88999999999999724---48877378899974236899776
Q ss_pred CC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 77--8488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r 270 SW--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420)
Q Consensus 270 t~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420)
+. +...+...++++.. ..+++|+...++.++...+.....+ ..++.+|++|++|||..+. +
T Consensus 62 ~~~~~~~~~~~~i~~~~~-~~g~~t~~~~al~~a~~~~~~~~~g-------------~R~~~~k~villTDG~~~d---~ 124 (213)
T 1pt6_A 62 NKYSSTEEVLVAAKKIVQ-RGGRQTMTALGTDTARKEAFTEARG-------------ARRGVKKVMVIVTDGESHD---N 124 (213)
T ss_dssp TTCSSHHHHHHHHHTCCC-CCCSSCCHHHHHHHHHHTTTSGGGT-------------CCTTCEEEEEEEESSCCSC---S
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHCCCCCC-------------CCCCCEEEEEEEECCCCCC---C
T ss_conf 556779999999877775-0784100212343444320132247-------------8778668999984698788---4
Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCCEE
Q ss_conf 348999999997898799999548977--------899999862189--8279817989999999999987420255
Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPN--------GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHRKY 414 (420)
Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~--------~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~lr~ 414 (420)
.......+.+|+.||+||+||+|...+ ....|+..|+.| .|+|.+++.++|.+.++.|.+.|-.+.-
T Consensus 125 ~~~~~~~~~lk~~gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~~~L~~i~~~l~~~ic~~~~ 201 (213)
T 1pt6_A 125 HRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFALEA 201 (213)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC
T ss_conf 15999999999889999999974765545433324699999986699854089808999999999999999724678