HHsearch results for GI: 254781110 and protein with PDBid: 2nvo_A
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=97.78 E-value=0.00055 Score=43.07 Aligned_cols=137 Identities=16% Similarity=0.136 Sum_probs=78.1
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS 270 (420)
Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 270 (420)
..+.+.+|+||||.+....+.. ..+..+.+ +.-.++-. ....++.++.|++.... .+++
T Consensus 363 ~r~lv~iDvSGSM~~~~~~~~~-----------~~~~~~~a--~lla~~~~-------r~~~~~~vv~Fs~~~~~-v~l~ 421 (535)
T 2nvo_A 363 TRHLLALDVSGSMTCGDVAGVP-----------GLTPNMAA--AAMSLIAL-------RTEPDALTMGFAEQFRP-LGIT 421 (535)
T ss_dssp SEEEEEECCSGGGGSCCGGGCT-----------TCCHHHHH--HHHHHHHH-------HHSSEEEEEEEBSSEEE-CCCC
T ss_pred CCEEEEEECCCCCCCCCCCCCC-----------CHHHHHHH--HHHHHHHH-------CCCCCEEEEEECCCEEE-ECCC
T ss_conf 7379999765556664237875-----------37799999--99999980-------75898079842796587-1788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf 78488999999864046788765388999999861310123345543347767787766624899606867777765348
Q gi|254781110|r 271 WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT 350 (420)
Q Consensus 271 ~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~ 350 (420)
.+.+ +...+..+. ..+.|+|++..+|.|+.+.-. ..+.+|++|||+.+.+... ..
T Consensus 422 ~~~s-l~~~~~~~~-~~~~ggT~~~~~l~~a~~~~~----------------------~~D~iIllTD~e~~~g~~~-p~ 476 (535)
T 2nvo_A 422 PRDT-LESAMQKAQ-SVSFGGTDCAQPILWAAQERL----------------------DVDTFVVYTDNETWAGQVH-PT 476 (535)
T ss_dssp TTCC-HHHHHHHTC-CSSBCCCCTTHHHHHHHHTTC----------------------CCSEEEEEESSCCCCCSSC-HH
T ss_pred CCCC-HHHHHHHHH-HCCCCCCHHHHHHHHHHHCCC----------------------CCCEEEEEECCCCCCCCCC-HH
T ss_conf 8864-999999986-157899669999999985654----------------------5898999808997789999-99
Q ss_pred HHHH--HHHHHCCCEEEEEEECCCC
Q ss_conf 9999--9999789879999954897
Q gi|254781110|r 351 IKIC--DKAKENFIKIVTISINASP 373 (420)
Q Consensus 351 ~~~c--~~~k~~gi~i~tIgf~~~~ 373 (420)
..+- ....+.+.++++|++....
T Consensus 477 ~al~~yr~~~~~~~klv~v~l~~~~ 501 (535)
T 2nvo_A 477 VALDQYAQKMGRAPKLIVVGLTATE 501 (535)
T ss_dssp HHHHHHHHHHSCCCEEEEEETTCSC
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 9999999971899718999803788