HHsearch results for GI: 254781110 and protein with PDBid: 2vdr_B
>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=97.72 E-value=0.0005 Score=43.37 Aligned_cols=146 Identities=15% Similarity=0.165 Sum_probs=84.7
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC-
Q ss_conf 4434432012210223242233578766667534676653067889998999985104678765543022320487643-
Q gi|254781110|r 186 GERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE- 264 (420)
Q Consensus 186 ~~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 264 (420)
..+...|+.|..|.++||.. .++.+++....+.+.+.... ...|+|+..|-+...
T Consensus 107 ~~~yPvDL~fLmD~TgSM~d---------------------dI~~lk~~~~~l~~~l~~~t---~~~rlGfgsf~Dk~~~ 162 (461)
T 2vdr_B 107 VEDYPVDIYYLMDLSYSMKD---------------------DLWSIQNLGTKLATQMRKLT---SNLRIGFGAFVDKPVS 162 (461)
T ss_dssp CSCCCEEEEEEEECSGGGGG---------------------GHHHHHHHHHHHHHHHHHHC---TTEEEEEEEECCCSST
T ss_pred CCCCCCCEEEEEECCCCHHH---------------------HHHHHHHHHHHHHHHHHHHC---CCCEEEEEEEEEECCC
T ss_conf 67787447999947746699---------------------99999999999999998528---8847999998973477
Q ss_pred -----------------------------CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-HCCCCCCCCC
Q ss_conf -----------------------------1244577848899999986404678876538899999986-1310123345
Q gi|254781110|r 265 -----------------------------KNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQI-LTSDKKRSFF 314 (420)
Q Consensus 265 -----------------------------~~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~-L~~~~~~~~~ 314 (420)
...+||.+..++.+.++.+. +.||-..+++..-|... +.-.+.-.|
T Consensus 163 p~~~~~~~~~l~~Pc~~~~~~c~~~f~~~~~l~lT~d~~~F~~~V~~~~---~sGggD~PE~~~dAL~qa~vc~~~igW- 238 (461)
T 2vdr_B 163 PYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQS---VSRNRDAPEGGFDAIMQATVCDEKIGW- 238 (461)
T ss_dssp TTSCCCSTHHHHCTTGGGTSCCCCCCSEEEEEEEESCHHHHHHHHHTCC---CCCCSBSSBCHHHHHHHHHHCHHHHTC-
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCEE---CCCCCCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf 6444466655048664678776787330452468878999999875036---547986776689999999986310787-
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCC------------------------CC-----CCCHHHHHHHHHHHCCCE-E
Q ss_conf 54334776778776662489960686777------------------------77-----653489999999978987-9
Q gi|254781110|r 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNN------------------------FK-----SNVNTIKICDKAKENFIK-I 364 (420)
Q Consensus 315 ~~~~~~~~~~~~~~~~k~iil~TDG~~~~------------------------~~-----~~~~~~~~c~~~k~~gi~-i 364 (420)
+++.+|++|++||.-.+. +. .......+.+.+++++|. |
T Consensus 239 -----------R~~a~rilvliTDA~~H~agDgkl~giv~pnDg~Chl~~~~~y~~s~~~DYPSv~ql~~~l~e~~i~pI 307 (461)
T 2vdr_B 239 -----------RNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLI 307 (461)
T ss_dssp -----------CTTSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEE
T ss_pred -----------CCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf -----------868759999989788433687544104438876315379887665555778999999999986496799
Q ss_pred EEEEEC
Q ss_conf 999954
Q gi|254781110|r 365 VTISIN 370 (420)
Q Consensus 365 ~tIgf~ 370 (420)
|.|.-.
T Consensus 308 FAVt~~ 313 (461)
T 2vdr_B 308 FAVTEN 313 (461)
T ss_dssp EEEEGG
T ss_pred EEECCC
T ss_conf 996553