HHsearch results for GI: 254781110 and protein with PDBid: 3k6s_B
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=95.96 E-value=0.012 Score=34.36 Aligned_cols=126 Identities=12% Similarity=0.131 Sum_probs=66.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 43124457784889999998640467887653889999998613-----1012334554334776778776662489960
Q gi|254781110|r 263 VEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILT-----SDKKRSFFTNFFRQGVKIPSLPFQKFIIFLT 337 (420)
Q Consensus 263 ~~~~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~-----~~~~~~~~~~~~~~~~~~~~~~~~k~iil~T 337 (420)
...+.+||.+...+.+.+++.. .+|+-..++|-.-|..... =+|+ +.+|++|+.|
T Consensus 182 ~~~~~~lt~~~~~f~~~~~~~~---~~~n~d~pe~~~da~~q~~~c~~~igwr-----------------~~~~~~~~~t 241 (687)
T 3k6s_B 182 FRHVLKLTNNSNQFQTEVGKQL---ISGNLDAPEGGLDAMMQVAACPEEIGWR-----------------NVTRLLVFAT 241 (687)
T ss_dssp CEEEEEEESCSHHHHHHHHTSC---CCCCSSSSCCHHHHHHHHTTCHHHHCCC-----------------SSCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHEE---EECCCCCCCCHHHHHHHHHHCCCCCCCC-----------------CCEEEEEEEC
T ss_conf 1542256677899999875167---0357768650166888877502223645-----------------7548999981
Q ss_pred CCCCCCCC----------------------------CCCHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 68677777----------------------------653489999999978987-9999954897789999986218982
Q gi|254781110|r 338 DGENNNFK----------------------------SNVNTIKICDKAKENFIK-IVTISINASPNGQRLLKTCVSSPEY 388 (420)
Q Consensus 338 DG~~~~~~----------------------------~~~~~~~~c~~~k~~gi~-i~tIgf~~~~~~~~~l~~cas~~~~ 388 (420)
|.-.+..- .......+-++++.++|. ||.|.=..-.--+. |..--. ++.
T Consensus 242 d~~~h~agdg~l~gi~~pnd~~chl~~~~y~~~~~~dyps~~~~~~~~~~~~i~~ifavt~~~~~~y~~-l~~~~~-~~~ 319 (687)
T 3k6s_B 242 DDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEK-LTEIIP-KSA 319 (687)
T ss_dssp SSCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHH-HHHHSS-SCC
T ss_pred CCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHH-HHHHCC-CCE
T ss_conf 687442676423104047887317048830356666778989999999864925999976644436899-997557-750
Q ss_pred EE-EE---CCH-HHHHHHHHHHHHHHH
Q ss_conf 79-81---798-999999999998742
Q gi|254781110|r 389 HY-NV---VNA-DSLIHVFQNISQLMV 410 (420)
Q Consensus 389 yf-~a---~~~-~~L~~aF~~Ia~~I~ 410 (420)
.= .+ .|- +=|.++|++|+..|.
T Consensus 320 ~~~l~~ds~ni~~li~~~y~~i~s~v~ 346 (687)
T 3k6s_B 320 VGELSEDSSNVVQLIKNAYNKLSSRVF 346 (687)
T ss_dssp EEECCTTCCSCGGGTTTHHHHHSSCCC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHCEEE
T ss_conf 476146647799999999986513799