Query         gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 420
No_of_seqs    153 out of 724
Neff          9.9 
Searched_HMMs 23785
Date          Wed Jun  1 00:51:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781110.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2odp_A Complement C2; C3/C5 co  99.7 2.5E-16 1.1E-20  123.4  14.6  194  185-408     4-212 (509)
  2 1shu_X Anthrax toxin receptor   99.7 1.7E-15   7E-20  118.1  18.1  175  190-409     6-181 (182)
  3 1q0p_A Complement factor B; VO  99.7   1E-15 4.4E-20  119.4  15.7  192  187-412    12-222 (223)
  4 1rrk_A Complement factor B; BB  99.7 2.4E-15   1E-19  117.0  15.0  187  191-411     2-207 (497)
  5 1v7p_C Integrin alpha-2; snake  99.6 2.8E-14 1.2E-18  110.1  17.5  181  190-412     6-198 (200)
  6 3ibs_A Conserved hypothetical   99.6 1.5E-13 6.2E-18  105.4  17.8  172  191-406    12-210 (218)
  7 1pt6_A Integrin alpha-1; X-RAY  99.6 5.4E-14 2.3E-18  108.2  14.5  183  190-414     7-201 (213)
  8 3hrz_D Complement factor B; se  99.6 1.3E-13 5.5E-18  105.7  16.1  173  227-413   260-451 (741)
  9 2b2x_A Integrin alpha-1; compu  99.6 1.2E-13 5.1E-18  105.9  13.5  183  190-414    22-216 (223)
 10 1atz_A VON willebrand factor;   99.5 6.3E-13 2.6E-17  101.3  15.3  176  190-410     5-184 (189)
 11 1n3y_A Integrin alpha-X; alpha  99.5 2.1E-13 8.8E-18  104.4  12.1  184  187-412     6-196 (198)
 12 1mf7_A Integrin alpha M; cell   99.5 1.8E-13 7.7E-18  104.8  10.6  180  190-411     5-191 (194)
 13 3gxb_A VON willebrand factor;   99.5 4.5E-12 1.9E-16   95.7  16.9  172  190-410     2-175 (184)
 14 1ijb_A VON willebrand factor;   99.5 2.2E-11 9.4E-16   91.2  19.1  182  189-411    12-197 (202)
 15 2x5n_A SPRPN10, 26S proteasome  99.4 1.1E-11 4.5E-16   93.2  14.5  150  192-381     4-154 (192)
 16 2xgg_A Microneme protein 2; A/  99.2 5.8E-10 2.5E-14   82.0  12.2  151  189-381    16-170 (178)
 17 1mjn_A Integrin alpha-L; rossm  99.1 4.4E-10 1.9E-14   82.7  10.1  171  190-409     2-179 (179)
 18 2x31_A Magnesium-chelatase 60   99.0 4.4E-11 1.8E-15   89.3  -0.4  169  190-404     5-185 (189)
 19 3k6s_A Integrin alpha-X; cell   98.9 1.7E-09   7E-14   79.0   4.6  166  227-414   147-319 (1095)
 20 2iue_A Pactolus I-domain; memb  98.7 1.5E-07 6.1E-12   66.4  11.0  160  190-392     3-193 (212)
 21 1jey_B KU80; double-strand DNA  97.9 0.00053 2.2E-08   43.2  13.8  146  192-372     9-169 (565)
 22 2nvo_A RO sixty-related protei  97.8 0.00055 2.3E-08   43.1  11.9  137  191-373   363-501 (535)
 23 2vdr_B Integrin beta-3; cell a  97.7  0.0005 2.1E-08   43.4  10.9  146  186-370   107-313 (461)
 24 1yvr_A RO autoantigen, 60-kDa   97.6  0.0034 1.4E-07   37.9  14.0  134  191-372   369-504 (538)
 25 3fcs_B Integrin beta-3; beta p  97.5 0.00093 3.9E-08   41.6   9.3  127  264-410   191-356 (690)
 26 3k6s_B Integrin beta-2; cell r  96.0   0.012   5E-07   34.4   5.6  126  263-410   182-346 (687)
 27 1jey_A KU70; double-strand DNA  64.1     5.6 0.00023   17.0  13.0   41  330-370   163-206 (609)
 28 1m2v_B SEC24, protein transpor  54.9       8 0.00034   16.0  18.2  158  232-410   323-549 (926)
 29 1kjn_A MTH0777; hypotethical p  51.8     7.6 0.00032   16.1   2.5   16  359-374   101-116 (157)
 30 3eh1_A Protein transport prote  48.5      10 0.00042   15.3  18.1  158  228-410   179-398 (751)
 31 1gee_A Glucose 1-dehydrogenase  44.1      12 0.00049   14.9   6.5   23  350-372   169-191 (261)
 32 2hq1_A Glucose/ribitol dehydro  42.8      12 0.00052   14.8   7.8   24  350-373   166-189 (247)
 33 3gk3_A Acetoacetyl-COA reducta  40.1      13 0.00057   14.5   7.6   23  350-372   186-208 (269)
 34 2k21_A Potassium voltage-gated  39.6      14 0.00058   14.5   3.2   34   17-50     46-79  (138)
 35 1pcx_A Protein transport prote  37.7      15 0.00062   14.3  18.0  159  231-410   206-433 (810)
 36 3is3_A 17BETA-hydroxysteroid d  34.5      16 0.00069   13.9   6.5   24  350-373   178-201 (270)
 37 3efo_B SEC24 related gene fami  32.3      18 0.00075   13.7  18.6  148  228-394   196-401 (770)
 38 3ijr_A Oxidoreductase, short c  31.7      18 0.00077   13.6  10.4   25  349-373   206-230 (291)
 39 2ket_A Cathelicidin-6; antimic  27.4      22  0.0009   13.2   2.5   22    3-24      2-23  (27)
 40 2cfc_A 2-(R)-hydroxypropyl-COM  26.6      22 0.00093   13.1   7.2   23  350-372   166-188 (250)
 41 3igz_B Cofactor-independent ph  26.1      23 0.00095   13.0   6.4   14  356-369   408-421 (561)
 42 2c71_A Glycoside hydrolase, fa  25.9      23 0.00096   13.0   2.7   37  331-367   149-185 (216)
 43 3icc_A Putative 3-oxoacyl-(acy  25.8      23 0.00097   13.0   8.1   22  350-371   172-193 (255)
 44 2w8t_A SPT, serine palmitoyltr  25.4     9.6  0.0004   15.5  -0.5   62  348-412   357-418 (427)
 45 3osu_A 3-oxoacyl-[acyl-carrier  24.5      24   0.001   12.8   7.2   22  350-371   165-186 (246)
 46 3afn_B A1-R, 4-deoxy-L-erythro  22.8      26  0.0011   12.6  10.1   22  351-372   176-197 (258)
 47 2kuq_A Fibroblast growth facto  22.5      27  0.0011   12.6   1.7   11  229-239    95-105 (153)
 48 1h5q_A NADP-dependent mannitol  22.3      27  0.0011   12.6   7.4   23  350-372   183-205 (265)
 49 3edm_A Short chain dehydrogena  21.1      28  0.0012   12.4   7.5   11  361-371   179-189 (259)

No 1  
>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.72  E-value=2.5e-16  Score=123.38  Aligned_cols=194  Identities=16%  Similarity=0.207  Sum_probs=133.2

Q ss_pred             CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf             34434432012210223242233578766667534676653067889998999985104678765543022320487643
Q gi|254781110|r  185 MGERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE  264 (420)
Q Consensus       185 ~~~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (420)
                      +......|+.|++|.|+||.                    ..+++.+++.+..+++.+...   ....|++++.|++...
T Consensus         4 ~~~~g~~DivfvlD~SgSm~--------------------~~~~~~~k~~~~~~i~~~~~~---~~~~rv~lv~fs~~~~   60 (509)
T 2odp_A            4 IQRSGHLNLYLLLDASQSVS--------------------ENDFLIFKESASLMVDRIFSF---EINVSVAIITFASEPK   60 (509)
T ss_dssp             CCSSSEEEEEEEEECSTTSC--------------------HHHHHHHHHHHHHHHHHHHTT---CCCEEEEEEEESSSEE
T ss_pred             CCCCCCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCEEE
T ss_conf             56789865999997869999--------------------899999999999999961448---9974899999888357


Q ss_pred             CCCCCCCCH----HHHHHHHHHHH--HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             124457784----88999999864--046788765388999999861310123345543347767787766624899606
Q gi|254781110|r  265 KNIEPSWGT----EKVRQYVTRDM--DSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTD  338 (420)
Q Consensus       265 ~~~~lt~~~----~~~~~~i~~~~--~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TD  338 (420)
                      ...+|+...    ..+.+.+..+.  ....+|+|++..||..++..+........       ......++.+|++||+||
T Consensus        61 ~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~~~~-------~~~~~~~~~~~~iillTD  133 (509)
T 2odp_A           61 VLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLG-------METMAWQEIRHAIILLTD  133 (509)
T ss_dssp             EEECTTSGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHC-------TTSHHHHTEEEEEEEESC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-------CCCCCCCCCCEEEEEECC
T ss_conf             9971788875579999999971734567789977799999999999998764302-------355666788629999948


Q ss_pred             CCCCCCCCCCHHH-HHHH-----HHHHCCCEEEEEEECCCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHH
Q ss_conf             8677777653489-9999-----9997898799999548977899999862189---8279817989999999999987
Q gi|254781110|r  339 GENNNFKSNVNTI-KICD-----KAKENFIKIVTISINASPNGQRLLKTCVSSP---EYHYNVVNADSLIHVFQNISQL  408 (420)
Q Consensus       339 G~~~~~~~~~~~~-~~c~-----~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~---~~yf~a~~~~~L~~aF~~Ia~~  408 (420)
                      |..|.+....... .+.+     ..|+.||.||+||+|...-..+.|+..|+.+   .|+|.+++.++|.++|++|-.+
T Consensus       134 G~~n~g~~~~~~~~~~~~~~~~~~~~~~~v~i~~igvG~~~~d~~~L~~ias~~~~~~h~f~~~~~~~L~~~~~~i~~~  212 (509)
T 2odp_A          134 GKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDV  212 (509)
T ss_dssp             SCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEEC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCC
T ss_conf             8756699848999998766666566306965999995886458999999865999971599948888999999740442


No 2  
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.71  E-value=1.7e-15  Score=118.06  Aligned_cols=175  Identities=15%  Similarity=0.122  Sum_probs=137.0

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      ..|+.|++|.|+||..                     .+...++.+..++..+.     .+..|++++.|++......++
T Consensus         6 ~~DivfliD~S~Sm~~---------------------~~~~~k~~~~~~~~~~~-----~~~~rvglv~fs~~~~~~~~~   59 (182)
T 1shu_X            6 AFDLYFVLDKSGSVAN---------------------NWIEIYNFVQQLAERFV-----SPEMRLSFIVFSSQATIILPL   59 (182)
T ss_dssp             CEEEEEEEECSGGGGG---------------------GHHHHHHHHHHHHHHCC-----CTTEEEEEEEESSSEEEEEEE
T ss_pred             CEEEEEEEECCCCCCC---------------------CHHHHHHHHHHHHHHHC-----CCCCEEEEEEECCCCEEECCC
T ss_conf             7469999938978432---------------------79999999999999735-----899879999960454152464


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf             77848899999986404678876538899999986131012334554334776778776662489960686777776534
Q gi|254781110|r  270 SWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVN  349 (420)
Q Consensus       270 t~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~  349 (420)
                      +++.....+.+..+....+.|+|++..++..+.+.+....                +...+|++|+||||..+... ...
T Consensus        60 ~~~~~~~~~~l~~~~~~~~~g~T~~~~al~~~~~~~~~~~----------------~~~~~~~ivllTDG~~~~~~-~~~  122 (182)
T 1shu_X           60 TGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAG----------------GLKTSSIIIALTDGKLDGLV-PSY  122 (182)
T ss_dssp             ECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHT----------------GGGSCEEEEEEECCCCCTTH-HHH
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC----------------CCCCCEEEEEEECCCCCCCC-CHH
T ss_conf             3557889998887740679998469999999999987503----------------67885599999728878886-489


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECC-HHHHHHHHHHHHHHH
Q ss_conf             899999999789879999954897789999986218982798179-899999999999874
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVN-ADSLIHVFQNISQLM  409 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~-~~~L~~aF~~Ia~~I  409 (420)
                      ....++.+|+.||.||+||++. .+. ..|+..|+.|++.|.+.+ .++|.+.++.|.+.|
T Consensus       123 ~~~~a~~l~~~gv~v~~Vgig~-~~~-~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~~~  181 (182)
T 1shu_X          123 AEKEAKISRSLGASVYCVGVLD-FEQ-AQLERIADSKEQVFPVKGGFQALKGIINSILAQS  181 (182)
T ss_dssp             HHHHHHHHHHTTCEEEEEECSS-CCH-HHHHHHSSSGGGEEESSSTTHHHHHHHHHHHHTB
T ss_pred             HHHHHHHHHHCCCEEEEEEECC-CCH-HHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH
T ss_conf             9999999997899999998475-489-9999985899966993499999999999998623


No 3  
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.70  E-value=1e-15  Score=119.38  Aligned_cols=192  Identities=16%  Similarity=0.181  Sum_probs=139.2

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf             43443201221022324223357876666753467665306788999899998510467876554302232048764312
Q gi|254781110|r  187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN  266 (420)
Q Consensus       187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (420)
                      .....++.|++|.|+||.                    ..+++..+.++..+++.+...   ....|++++.|++.....
T Consensus        12 ~~~~~DivfvlD~SgSm~--------------------~~~~~~~k~~~~~li~~~~~~---~~~~rvgvv~fs~~~~~~   68 (223)
T 1q0p_A           12 PSGSMNIYLVLDGSDSIG--------------------ASNFTGAKKSLVNLIEKVASY---GVKPRYGLVTYATYPKIW   68 (223)
T ss_dssp             ---CEEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHHHHTT---TCCCEEEEEEESSSEEEE
T ss_pred             CCCCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCEEEE
T ss_conf             989861899994888888--------------------288999999999999973368---877589999975937899


Q ss_pred             CCCCCCH----HHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             4457784----8899999986404--678876538899999986131012334554334776778776662489960686
Q gi|254781110|r  267 IEPSWGT----EKVRQYVTRDMDS--LILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGE  340 (420)
Q Consensus       267 ~~lt~~~----~~~~~~i~~~~~~--~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~  340 (420)
                      .+++...    ......++.+...  ..+|+|++..+|..+...+.....          ......+...|++||+|||.
T Consensus        69 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~----------~~~~~~~~~~~~ivllTDG~  138 (223)
T 1q0p_A           69 VKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD----------VPPEGWNRTRHVIILMTDGL  138 (223)
T ss_dssp             ECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTS----------SCCTTGGGCEEEEEEEECSC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC----------CCCCCCCCCCEEEEEECCCC
T ss_conf             70786302456789999985454216688897599999999999864011----------46666777742899976887


Q ss_pred             CCCCCCCCHHHHHHH----------HHHHCCCEEEEEEECCCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHH
Q ss_conf             777776534899999----------9997898799999548977899999862189---827981798999999999998
Q gi|254781110|r  341 NNNFKSNVNTIKICD----------KAKENFIKIVTISINASPNGQRLLKTCVSSP---EYHYNVVNADSLIHVFQNISQ  407 (420)
Q Consensus       341 ~~~~~~~~~~~~~c~----------~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~---~~yf~a~~~~~L~~aF~~Ia~  407 (420)
                      .|.+.........++          .++..|+.+|+||+|.+.+. ..|+.+|+.+   .+||.+++.++|.++|.+|..
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~igvg~~~~~-~~L~~iAs~~~~~~~~~~~~d~~~L~~~~~~i~~  217 (223)
T 1q0p_A          139 HNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQ-VNINALASKKDNEQHVFKVKDMENLEDVFYQMID  217 (223)
T ss_dssp             CCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCH-HHHHHHSCCCTTCCCEEETTC-------------
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-HHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             677898289999998633467999998767965999736875699-9999997498997479990899999999999998


Q ss_pred             HHHCC
Q ss_conf             74202
Q gi|254781110|r  408 LMVHR  412 (420)
Q Consensus       408 ~I~~l  412 (420)
                      +..+|
T Consensus       218 e~~s~  222 (223)
T 1q0p_A          218 ESQSL  222 (223)
T ss_dssp             ----C
T ss_pred             HHCCC
T ss_conf             61478


No 4  
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.67  E-value=2.4e-15  Score=117.04  Aligned_cols=187  Identities=17%  Similarity=0.187  Sum_probs=133.0

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r  191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS  270 (420)
Q Consensus       191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt  270 (420)
                      +|+.|++|.|+||.                    ..+++..++++..+++.+...   .+..|++++.|++......+++
T Consensus         2 lDivfvlD~S~Sm~--------------------~~~~~~~k~~~~~~i~~~~~~---~~~~rv~lv~f~~~~~~~~~l~   58 (497)
T 1rrk_A            2 MNIYLVLDGSDSIG--------------------ASNFTGAKKVLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVS   58 (497)
T ss_dssp             EEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESSSEEEEECTT
T ss_pred             CCEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCCC---CCCEEEEEEEECCEEEEEECCC
T ss_conf             45899995779998--------------------699999999999999853658---9960999999878178997379


Q ss_pred             CC----HHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             78----48899999986404--6788765388999999861310123345543347767787766624899606867777
Q gi|254781110|r  271 WG----TEKVRQYVTRDMDS--LILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF  344 (420)
Q Consensus       271 ~~----~~~~~~~i~~~~~~--~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~  344 (420)
                      ..    ...+.+.++++...  ...|+|++..+|.++...+......          ........+|++||+|||..|.+
T Consensus        59 ~~~~~~~~~~~~~i~~i~~~~~~~~g~T~~~~al~~a~~~~~~~~~~----------~~~~~~~~~~viillTDG~~n~~  128 (497)
T 1rrk_A           59 EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV----------PPEGWNRTRHVIILMTDGLHNMG  128 (497)
T ss_dssp             SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC----------------CGGGCEEEEEEEECSCCCSS
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC----------CCCCCCCCCEEEEEEECCCCCCC
T ss_conf             87756899999999608566886888757999999999998652014----------75555678759999979767778


Q ss_pred             CCCCHHHHH----------HHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf             765348999----------999997898799999548977899999862189---8279817989999999999987420
Q gi|254781110|r  345 KSNVNTIKI----------CDKAKENFIKIVTISINASPNGQRLLKTCVSSP---EYHYNVVNADSLIHVFQNISQLMVH  411 (420)
Q Consensus       345 ~~~~~~~~~----------c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~---~~yf~a~~~~~L~~aF~~Ia~~I~~  411 (420)
                      .........          ...+|+.||.||+||+|.+.+.. .|+..|+.+   .|||.+++.++|.++|..+.++-..
T Consensus       129 ~~p~~~~~~i~~~~~~~~~~~~~~~~gi~i~~vgiG~~~d~~-~L~~iAs~~~~~~~~f~~~d~~~L~~~~~~~~~~~~~  207 (497)
T 1rrk_A          129 GDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQV-NINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQS  207 (497)
T ss_dssp             SCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHH-HHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHH-HHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCC
T ss_conf             987899999998787777776687679079997368867999-9998751789850499949999999987530246602


No 5  
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.64  E-value=2.8e-14  Score=110.08  Aligned_cols=181  Identities=19%  Similarity=0.199  Sum_probs=135.1

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      ..|+.|++|.|+||.                      .++..++.+..+++.+..   .++..|++++.|++......+|
T Consensus         6 ~~DivfvlD~S~S~~----------------------~~~~~k~f~~~~i~~~~i---~~~~~rv~vv~fs~~~~~~~~l   60 (200)
T 1v7p_C            6 LIDVVVVCDESNSIY----------------------PWDAVKNFLEKFVQGLDI---GPTKTQVGLIQYANNPRVVFNL   60 (200)
T ss_dssp             CEEEEEEEECCTTCC----------------------CHHHHHHHHHHHHHTSCB---STTSEEEEEEEESSSEEEEECT
T ss_pred             CEEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCEEEEECC
T ss_conf             166999997989886----------------------799999999999997155---8876089999975954674066


Q ss_pred             CC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             77--8488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r  270 SW--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN  347 (420)
Q Consensus       270 t~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~  347 (420)
                      +.  +...+...+..+.. ..+++|+...+|.++.+.+.....             ...++.+|++|++|||..+..   
T Consensus        61 ~~~~~~~~~~~~i~~i~~-~~g~~t~~~~AL~~a~~~~f~~~~-------------~~r~~~~kvivllTDG~~~d~---  123 (200)
T 1v7p_C           61 NTYKTKEEMIVATSQTSQ-YGGDLTNTFGAIQYARKYAYSAAS-------------GGRRSATKVMVVVTDGESHDG---  123 (200)
T ss_dssp             TTCSSHHHHHHHHHHCCC-CCCSCCCHHHHHHHHHHHTTSGGG-------------TCCTTSEEEEEEEESSCCSCG---
T ss_pred             CCHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCCC-------------CCCCCCCEEEEEEECCCCCCC---
T ss_conf             421158999999876306-799964289999999997337355-------------888888555999827988886---


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCC
Q ss_conf             348999999997898799999548977--------899999862189--82798179899999999999874202
Q gi|254781110|r  348 VNTIKICDKAKENFIKIVTISINASPN--------GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHR  412 (420)
Q Consensus       348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~--------~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~l  412 (420)
                      ......++.+|+.||+||+||++...+        ....|+..|+.|  .|+|.+++.++|.+.++.|.+.|-++
T Consensus       124 ~~~~~~~~~~~~~gi~i~~Igvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~d~~~L~~~~~~l~~~ic~i  198 (200)
T 1v7p_C          124 SMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFSI  198 (200)
T ss_dssp             GGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf             113999998764890999999777445565443125999999866998613999389999999999999772056


No 6  
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for structural genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.60  E-value=1.5e-13  Score=105.37  Aligned_cols=172  Identities=16%  Similarity=0.202  Sum_probs=130.6

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r  191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS  270 (420)
Q Consensus       191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt  270 (420)
                      .++.+++|+|+||....               ...+|++.++.++..+++.+.       ..+++++.|++......+++
T Consensus        12 ~divlvvD~SgSM~~~D---------------~~~~R~~~ak~~~~~~l~~~~-------~~rvglv~F~~~~~~~~~~t   69 (218)
T 3ibs_A           12 VEVIIALDISNSMLAQD---------------VQPSRLEKAKRLISRLVDELD-------NDKVGMIVFAGDAFTQLPIT   69 (218)
T ss_dssp             CEEEEEEECSGGGGCCS---------------SSSCHHHHHHHHHHHHHHTCS-------SCEEEEEEESSSEEEEEEEE
T ss_pred             CEEEEEEECCCCCCCCC---------------CCCCHHHHHHHHHHHHHHHCC-------CCEEEEEEECCCCCCCCCCC
T ss_conf             58999997985778877---------------784899999999999995099-------97699999768442011243


Q ss_pred             CCHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf             784889999998640-4678876538899999986131012334554334776778776662489960686777776534
Q gi|254781110|r  271 WGTEKVRQYVTRDMD-SLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVN  349 (420)
Q Consensus       271 ~~~~~~~~~i~~~~~-~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~  349 (420)
                      .+.......+..+.. ..+.|+|++..++.++...|.+                  .+...|++||+|||+++...    
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~gT~~~~al~~a~~~l~~------------------~~~~~~~iillSDG~~~~~~----  127 (218)
T 3ibs_A           70 SDYISAKMFLESISPSLISKQGTAIGEAINLATRSFTP------------------QEGVGRAIIVITDGENHEGG----  127 (218)
T ss_dssp             SCHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCS------------------CSSCCEEEEEEECCTTCCSC----
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH------------------HCCCCCEEEEECCCCCCCCC----
T ss_conf             06778888887522145668996378999999987412------------------02677679996589988761----


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCC------------------------HHHHHHHHHC-CCCCEEEECCHHHHHHHHHH
Q ss_conf             8999999997898799999548977------------------------8999998621-89827981798999999999
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINASPN------------------------GQRLLKTCVS-SPEYHYNVVNADSLIHVFQN  404 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~~~~------------------------~~~~l~~cas-~~~~yf~a~~~~~L~~aF~~  404 (420)
                      .......++..++.+++|+++.+..                        ...+|+..|. ++|.||.+.+.+++.++|..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~iA~~tgG~y~~~~~~~~~~~~i~~  207 (218)
T 3ibs_A          128 AVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQ  207 (218)
T ss_dssp             HHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHH
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf             38999999876987999986268786211226775221467762433269999999999649189995287999999999


Q ss_pred             -HH
Q ss_conf             -99
Q gi|254781110|r  405 -IS  406 (420)
Q Consensus       405 -Ia  406 (420)
                       |.
T Consensus       208 ~I~  210 (218)
T 3ibs_A          208 EIS  210 (218)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             997


No 7  
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.59  E-value=5.4e-14  Score=108.25  Aligned_cols=183  Identities=19%  Similarity=0.219  Sum_probs=133.6

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      ..|+.|++|.|+||.                      .++..+..+..+++.+.   ..+...|++++.|++......+|
T Consensus         7 ~~DivfvlD~S~S~~----------------------~f~~~k~f~~~~i~~~~---~~~~~~rv~vv~y~~~~~~~~~l   61 (213)
T 1pt6_A            7 QLDIVIVLDGSNSIY----------------------PWDSVTAFLNDLLKRMD---IGPKQTQVGIVQYGENVTHEFNL   61 (213)
T ss_dssp             CEEEEEEEECCTTCC----------------------CHHHHHHHHHHHHTTSC---BSTTSBEEEEEEESSSEEEEECT
T ss_pred             CEEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHHC---CCCCCCEEEEEEEEEEEEEEECC
T ss_conf             448999997988887----------------------88999999999999724---48877378899974236899776


Q ss_pred             CC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             77--8488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r  270 SW--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN  347 (420)
Q Consensus       270 t~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~  347 (420)
                      +.  +...+...++++.. ..+++|+...++.++...+.....+             ..++.+|++|++|||..+.   +
T Consensus        62 ~~~~~~~~~~~~i~~~~~-~~g~~t~~~~al~~a~~~~~~~~~g-------------~R~~~~k~villTDG~~~d---~  124 (213)
T 1pt6_A           62 NKYSSTEEVLVAAKKIVQ-RGGRQTMTALGTDTARKEAFTEARG-------------ARRGVKKVMVIVTDGESHD---N  124 (213)
T ss_dssp             TTCSSHHHHHHHHHTCCC-CCCSSCCHHHHHHHHHHTTTSGGGT-------------CCTTCEEEEEEEESSCCSC---S
T ss_pred             CCCCCHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHCCCCCC-------------CCCCCEEEEEEEECCCCCC---C
T ss_conf             556779999999877775-0784100212343444320132247-------------8778668999984698788---4


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCCEE
Q ss_conf             348999999997898799999548977--------899999862189--8279817989999999999987420255
Q gi|254781110|r  348 VNTIKICDKAKENFIKIVTISINASPN--------GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHRKY  414 (420)
Q Consensus       348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~--------~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~lr~  414 (420)
                      .......+.+|+.||+||+||+|...+        ....|+..|+.|  .|+|.+++.++|.+.++.|.+.|-.+.-
T Consensus       125 ~~~~~~~~~lk~~gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~~~L~~i~~~l~~~ic~~~~  201 (213)
T 1pt6_A          125 HRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFALEA  201 (213)
T ss_dssp             HHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC
T ss_conf             15999999999889999999974765545433324699999986699854089808999999999999999724678


No 8  
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A*
Probab=99.58  E-value=1.3e-13  Score=105.73  Aligned_cols=173  Identities=15%  Similarity=0.189  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCH----HHHHHHHHHHHHC--CCCCCCCHHHHHHH
Q ss_conf             67889998999985104678765543022320487643124457784----8899999986404--67887653889999
Q gi|254781110|r  227 KMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSWGT----EKVRQYVTRDMDS--LILKPTDSTPAMKQ  300 (420)
Q Consensus       227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~----~~~~~~i~~~~~~--~~~g~T~~~~gl~~  300 (420)
                      .++..+..+..+++.+...   .+..|++++.|++.......++...    ..+.+.++.+...  ...|+|+...||.+
T Consensus       260 ~f~~~k~f~~~lv~~~~~~---~~~~rv~vi~ys~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~ggT~t~~Al~~  336 (741)
T 3hrz_D          260 DFTGAKKCLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQA  336 (741)
T ss_dssp             HHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCCGGGGSSSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             8999999999999863468---8874699999647715888516666789999999997177666778887589999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHH-H---------HHHHHHCCCEEEEEEEC
Q ss_conf             9986131012334554334776778776662489960686777776534899-9---------99999789879999954
Q gi|254781110|r  301 AYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIK-I---------CDKAKENFIKIVTISIN  370 (420)
Q Consensus       301 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~~~-~---------c~~~k~~gi~i~tIgf~  370 (420)
                      +...+.....          +.....++.+|++|++|||..+.+........ +         .+.+|.+||.||+||+|
T Consensus       337 ~~~~~~~~~~----------~~~~~~~~~~~vlillTDG~s~~g~~p~~~~~~~~~~~~~~~~~~~~~~~gi~i~~igvg  406 (741)
T 3hrz_D          337 VYSMMSWPDD----------VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVG  406 (741)
T ss_dssp             HHHHHCCC------------CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECS
T ss_pred             HHHHHHHHHC----------CCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf             9986421101----------575556789859999899865578883244443221222346677788789399999867


Q ss_pred             CCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHCCE
Q ss_conf             8977899999862189---827981798999999999998742025
Q gi|254781110|r  371 ASPNGQRLLKTCVSSP---EYHYNVVNADSLIHVFQNISQLMVHRK  413 (420)
Q Consensus       371 ~~~~~~~~l~~cas~~---~~yf~a~~~~~L~~aF~~Ia~~I~~lr  413 (420)
                      .+.+.. .|+..|+.+   .|+|.+.+-++|.++|..|.+...+.+
T Consensus       407 ~~~~~~-~L~~iAs~~~~~~~v~~~~d~~~L~~~~~~~~~~~~~~~  451 (741)
T 3hrz_D          407 PLVNQV-NINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLS  451 (741)
T ss_dssp             SSCCHH-HHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCTT
T ss_pred             CCCCHH-HHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCC
T ss_conf             758999-999997088886239996899998888744300232344


No 9  
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.55  E-value=1.2e-13  Score=105.95  Aligned_cols=183  Identities=17%  Similarity=0.213  Sum_probs=133.8

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      ..|+.|++|.|++|.                      .++..+..+..+++.+.   ..++..|++++.|++......+|
T Consensus        22 ~~DivfvlD~S~sv~----------------------~~~~~k~fv~~li~~~~---i~~~~~rv~lv~fs~~~~~~~~l   76 (223)
T 2b2x_A           22 QLDIVIVLDGSNSIY----------------------PWESVIAFLNDLLKRMD---IGPKQTQVGIVQYGENVTHEFNL   76 (223)
T ss_dssp             CEEEEEEEECSTTCC----------------------CHHHHHHHHHHHHTTSC---CSTTSCCEEEEEESSSEEEEECT
T ss_pred             CEEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHCC---CCCCCCEEEEEEEECCEEEECCC
T ss_conf             656999997988743----------------------69999999999999715---58886089899860426786054


Q ss_pred             CCCH--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             7784--88999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r  270 SWGT--EKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN  347 (420)
Q Consensus       270 t~~~--~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~  347 (420)
                      +...  ..+...++.+.. ..+++|+...+|.++.+.+.....+             .+++.+|++|++|||..+.   +
T Consensus        77 ~~~~~~~~~~~~i~~i~~-~~~~~t~~~~aL~~~~~~~~~~~~g-------------~R~~~~kvlillTDG~~~d---~  139 (223)
T 2b2x_A           77 NKYSSTEEVLVAANKIVQ-RGGRQTMTALGIDTARKEAFTEARG-------------ARRGVKKVMVIVTDGESHD---N  139 (223)
T ss_dssp             TTCCSHHHHHHHHTTCCC-CCCSSCCHHHHHHHHHHTTSSGGGT-------------CCTTSEEEEEEEESSCCTT---G
T ss_pred             CCCCCHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCCC-------------CCCCCCEEEEEEECCCCCC---C
T ss_conf             555768999999874312-4773322177788888875033358-------------8878725799982698788---3


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCCHH--------HHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCCEE
Q ss_conf             34899999999789879999954897789--------9999862189--8279817989999999999987420255
Q gi|254781110|r  348 VNTIKICDKAKENFIKIVTISINASPNGQ--------RLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHRKY  414 (420)
Q Consensus       348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~~~--------~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~lr~  414 (420)
                      .........+|+.||+||+||+|.+.+..        ..|+..||.|  .|+|.+++.++|.++++.|.+.|-.+..
T Consensus       140 ~~~~~~a~~lk~~gi~v~~Igvg~~~~~~~~~~~~~~~eL~~IAs~p~~~~~f~~~d~~~L~~i~~~l~~~ic~~e~  216 (223)
T 2b2x_A          140 YRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFALEA  216 (223)
T ss_dssp             GGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC----
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             12999999998759989999984666644324423699999986699855189818999999999999988643103


No 10 
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 2adf_A 1fe8_A 1ao3_A
Probab=99.52  E-value=6.3e-13  Score=101.29  Aligned_cols=176  Identities=13%  Similarity=0.131  Sum_probs=128.0

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      ..|+.|++|.|++|.                    ...++..+..+..+++.+..   .++..|++++.|++......++
T Consensus         5 ~~DivfllD~S~s~~--------------------~~~~~~~k~fv~~~i~~~~i---~~~~~rv~vv~y~~~~~~~~~l   61 (189)
T 1atz_A            5 PLDVILLLDGSSSFP--------------------ASYFDEMKSFAKAFISKANI---GPRLTQVSVLQYGSITTIDVPW   61 (189)
T ss_dssp             CEEEEEEEECSSSSC--------------------HHHHHHHHHHHHHHHHHSCB---STTSEEEEEEEESSSEEEEECT
T ss_pred             CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEEEEEEEEEEEEE
T ss_conf             578999994879988--------------------68999999999999997075---8887489999975013899985


Q ss_pred             CC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             77--8488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r  270 SW--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN  347 (420)
Q Consensus       270 t~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~  347 (420)
                      ..  +...+.+.++.+.  ..+|+|++..+|.++.+.+.....+             .+++.+|++|++|||..+.    
T Consensus        62 ~~~~~~~~~~~~i~~l~--~~gg~t~~~~al~~a~~~~~~~~~g-------------~R~~a~k~vvlltdg~~~~----  122 (189)
T 1atz_A           62 NVVPEKAHLLSLVDVMQ--REGGPSQIGDALGFAVRYLTSEMHG-------------ARPGASKAVVILVTDVSVD----  122 (189)
T ss_dssp             TCCCCHHHHHHHHHTCC--CCCCCCCHHHHHHHHHHHHHSCCTT-------------CCTTSEEEEEEEECSCCSS----
T ss_pred             ECCCCHHHHHHHHHHHH--HCCCCCCCCHHHHHHHHHHHHHHCC-------------CCCCCEEEEEEEECCCCCC----
T ss_conf             23675899999999887--4377876325789999997401027-------------9998805899992599865----


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             348999999997898799999548977899999862189--827981798999999999998742
Q gi|254781110|r  348 VNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMV  410 (420)
Q Consensus       348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~  410 (420)
                       .....++.+|..||+||+||+|.+.+... |+..|+.+  ++.|.+.+.++|. .+..|.++|.
T Consensus       123 -~~~~~~~~lk~~~i~v~~igig~~~~~~~-l~~ia~~~~~~~~~~~~~~~~l~-~l~~~~~~~~  184 (189)
T 1atz_A          123 -SVDAAADAARSNRVTVFPIGIGDRYDAAQ-LRILAGPAGDSNVVKLQRIEDLP-TMVTLGNSFL  184 (189)
T ss_dssp             -CCHHHHHHHHHTTEEEEEEEESSSSCHHH-HHHHTGGGGGGGCEEESSTTHHH-HHHHSCSHHH
T ss_pred             -CHHHHHHHHHHCCCEEEEEEECCCCCHHH-HHHHHCCCCCCCEEEECCHHHHH-HHHHHHHHHH
T ss_conf             -18999999998899999999588699999-99985788877589946876688-8999999998


No 11 
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.51  E-value=2.1e-13  Score=104.41  Aligned_cols=184  Identities=15%  Similarity=0.160  Sum_probs=131.3

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf             43443201221022324223357876666753467665306788999899998510467876554302232048764312
Q gi|254781110|r  187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN  266 (420)
Q Consensus       187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (420)
                      .+...|+.|++|.|+||..                    ..+...+..+..+++.+.     ....|++++.|++.....
T Consensus         6 ~~~~~DivfvlD~S~Sm~~--------------------~~~~~~k~~i~~li~~l~-----~~~~rv~vv~f~~~~~~~   60 (198)
T 1n3y_A            6 SRQEQDIVFLIDGSGSISS--------------------RNFATMMNFVRAVISQFQ-----RPSTQFSLMQFSNKFQTH   60 (198)
T ss_dssp             --CCEEEEEEEECCTTSCH--------------------HHHHHHHHHHHHHHTTSC-----TTTEEEEEEEESSSEEEE
T ss_pred             CCCCCCEEEEEECCCCCCH--------------------HHHHHHHHHHHHHHHHHC-----CCCCEEEEEEEECCEEEE
T ss_conf             6888648999968799887--------------------999999999999999708-----998589999983432341


Q ss_pred             CCCCCCHH--HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             44577848--8999999864046788765388999999861310123345543347767787766624899606867777
Q gi|254781110|r  267 IEPSWGTE--KVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF  344 (420)
Q Consensus       267 ~~lt~~~~--~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~  344 (420)
                      .+|+...+  .+...++.+  .+.+|+|+...++.++...+.....             ...+..+|++||+|||..+..
T Consensus        61 ~~l~~~~~~~~~~~~i~~~--~~~~~~t~~~~al~~a~~~~~~~~~-------------~~r~~~~kvivlltDG~~~~~  125 (198)
T 1n3y_A           61 FTFEEFRRSSNPLSLLASV--HQLQGFTYTATAIQNVVHRLFHASY-------------GARRDAAKILIVITDGKKEGD  125 (198)
T ss_dssp             ECHHHHHHCSSGGGGGTTC--CCCCSCBCHHHHHHHHHTTTTSGGG-------------TCCTTSEEEEEEEESSCCBSC
T ss_pred             CCCCCCCCHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHC-------------CCCCCCCCEEEEEECCCCCCC
T ss_conf             2666643389999988765--4036987388999999999842320-------------577876425999935898887


Q ss_pred             CCCCHHHHHHHHHHHCCCEEEEEEECCCC---CHHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCC
Q ss_conf             76534899999999789879999954897---7899999862189--82798179899999999999874202
Q gi|254781110|r  345 KSNVNTIKICDKAKENFIKIVTISINASP---NGQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHR  412 (420)
Q Consensus       345 ~~~~~~~~~c~~~k~~gi~i~tIgf~~~~---~~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~l  412 (420)
                      .  ......++.+|..||+||+||++...   .....|+.+|+.|  .++|.+++.++|.+.++.|.+.|--+
T Consensus       126 ~--~~~~~~~~~~~~~gv~i~~Ig~g~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~i~~~l~~~ic~~  196 (198)
T 1n3y_A          126 S--LDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAI  196 (198)
T ss_dssp             S--SCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHTC
T ss_pred             C--CCHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf             2--0599999999978988999997876677534999999866998651999299999999999999873167


No 12 
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=99.49  E-value=1.8e-13  Score=104.76  Aligned_cols=180  Identities=16%  Similarity=0.171  Sum_probs=129.3

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      ..|+.|++|.|++|.                    ...+...+..+..++..+.     ....|++++.|++......+|
T Consensus         5 ~~DivfvlD~S~s~~--------------------~~~f~~~k~~i~~~i~~l~-----~~~~rvgvv~f~~~~~~~~~l   59 (194)
T 1mf7_A            5 DSDIAFLIDGSGSII--------------------PHDFRRMKEFVSTVMEQLK-----KSKTLFSLMQYSEEFRIHFTF   59 (194)
T ss_dssp             CEEEEEEEECCTTSC--------------------HHHHHHHHHHHHHHHHHHC-----CTTEEEEEEEESSSEEEEECH
T ss_pred             CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCC-----CCCCEEEEEEEEEEEEEEECC
T ss_conf             717999995989988--------------------7999999999999999719-----888089999965403775114


Q ss_pred             CCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             778--488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r  270 SWG--TEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN  347 (420)
Q Consensus       270 t~~--~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~  347 (420)
                      +..  ...+.+.++.+.  ..+|+|+...++.++.+.+.....             ...+..+|++|++|||..+.... 
T Consensus        60 ~~~~~~~~~~~~i~~l~--~~~g~t~~~~al~~a~~~~~~~~~-------------~~~~~~~kvvvl~tDG~~~~~~~-  123 (194)
T 1mf7_A           60 KEFQNNPNPRSLVKPIT--QLLGRTHTATGIRKVVRELFNITN-------------GARKNAFKILVVITDGEKFGDPL-  123 (194)
T ss_dssp             HHHHHSCCHHHHHTTCC--CCCSCBCHHHHHHHHHHTTTSGGG-------------TCCTTSEEEEEEEESSCCBSCSS-
T ss_pred             CCCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHC-------------CCCCCCCEEEEEEECCCCCCCHH-
T ss_conf             66366899998764134--236986699999999998741432-------------67677664999994788789804-


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf             348999999997898799999548977---899999862189--8279817989999999999987420
Q gi|254781110|r  348 VNTIKICDKAKENFIKIVTISINASPN---GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVH  411 (420)
Q Consensus       348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~---~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~  411 (420)
                       .+......+|..||+||+||++....   ....|+.+|+.|  .++|.+++.++|.+.++.|.+.|-.
T Consensus       124 -~~~~~~~~l~~~gv~v~~Vgi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~i~~  191 (194)
T 1mf7_A          124 -GYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC  191 (194)
T ss_dssp             -CGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf             -49999999997799999999788766634699999986699866089949999999999999876414


No 13 
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens}
Probab=99.48  E-value=4.5e-12  Score=95.69  Aligned_cols=172  Identities=12%  Similarity=0.058  Sum_probs=124.3

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      +.|+.|++|.|+|+.                    ...++..++.+..+++.+.-   .+...|++++.|++......+|
T Consensus         2 vlDivfllD~S~Sv~--------------------~~~f~~~k~fi~~~i~~l~i---~~~~~rvgvv~fs~~~~~~~~l   58 (184)
T 3gxb_A            2 VLDVAFVLEGSDKIG--------------------EADFNRSKEFMEEVIQRMDV---GQDSIHVTVLQYSYMVTVEYPF   58 (184)
T ss_dssp             CEEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHTSCB---CTTSEEEEEEEESSSEEEEECT
T ss_pred             CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEEECCCEEEEEEC
T ss_conf             168999997989989--------------------79999999999999996365---9873499998854717899846


Q ss_pred             CC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             77--8488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r  270 SW--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN  347 (420)
Q Consensus       270 t~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~  347 (420)
                      +.  +...+...++.+.. ..+++|+.+.+|.++.+.+.....             ..+++.+|++|++|||..+..-. 
T Consensus        59 ~~~~~~~~~~~~i~~i~~-~~g~~t~~~~AL~~~~~~~f~~~~-------------~~R~~~~kvivllTdG~s~d~~~-  123 (184)
T 3gxb_A           59 SEAQSKGDILQRVREIRY-QGGNRTNTGLALRYLSDHSFLVSQ-------------GDREQAPNLVYMVTGNPASDEIK-  123 (184)
T ss_dssp             TSCCCHHHHHHHHHTCCC-CCCSCCCHHHHHHHHHHTGGGSCC-------------GGGGGSCEEEEEEECSCCSSCCC-
T ss_pred             CCCCCHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCC-------------CCCCCCCEEEEEECCCCCCHHHH-
T ss_conf             876777999998630011-377654179999999998526344-------------89999966999965999706899-


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             348999999997898799999548977899999862189827981798999999999998742
Q gi|254781110|r  348 VNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMV  410 (420)
Q Consensus       348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~~aF~~Ia~~I~  410 (420)
                               .+.+||+||+||+|.+.+.. .|+..|+ ++++|.+++.++|.+.++.|.+++-
T Consensus       124 ---------~~~~gi~i~~vgvG~~~~~~-~L~~ia~-~~~~~~~~~~~~L~~~~~~l~~~~c  175 (184)
T 3gxb_A          124 ---------RLPGDIQVVPIGVGPNANVQ-ELERIGW-PNAPILIQDFETLPREAPDLVLQRC  175 (184)
T ss_dssp             ---------CCCTTEEEEEEEESTTSCHH-HHHHHHT-TSCCEEESCTTTHHHHHHHHHHHHH
T ss_pred             ---------HHHCCCEEEEEECCCCCCHH-HHHHHCC-CCCEEEECCHHHHHHHHHHHHHHHC
T ss_conf             ---------98489989999846747999-9998739-9977994899999999999997546


No 14 
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.46  E-value=2.2e-11  Score=91.20  Aligned_cols=182  Identities=10%  Similarity=0.142  Sum_probs=133.7

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf             44320122102232422335787666675346766530678899989999851046787655430223204876431244
Q gi|254781110|r  189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIE  268 (420)
Q Consensus       189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (420)
                      ...|+.|++|.|+||.                    ..+++.++..+..+++.+...   ....++++..|++......+
T Consensus        12 ~~~DlvfvlD~SgSm~--------------------~~~~~~~k~~~~~li~~l~~~---~~~~~v~~~~~~~~~~~~~~   68 (202)
T 1ijb_A           12 RLLDLVFLLDGSSRLS--------------------EAEFEVLKAFVVDMMERLRVS---QKWVRVAVVEYHDGSHAYIG   68 (202)
T ss_dssp             SCEEEEEEEECBTTSC--------------------HHHHHHHHHHHHHHHHTBCBS---TTSEEEEEEEESSSEEEEEC
T ss_pred             CCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEEEE
T ss_conf             8734899996889988--------------------589999999999999866678---88736888774263268860


Q ss_pred             CCCCH--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             57784--8899999986404678876538899999986131012334554334776778776662489960686777776
Q gi|254781110|r  269 PSWGT--EKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKS  346 (420)
Q Consensus       269 lt~~~--~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~  346 (420)
                      +....  ......+..+.. ..+++++...++.+....+....               ..+...|.+++++||..+....
T Consensus        69 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~  132 (202)
T 1ijb_A           69 LKDRKRPSELRRIASQVKY-AGSQVASTSEVLKYTLFQIFSKI---------------DRPEASRIALLLMASQEPQRMS  132 (202)
T ss_dssp             TTCCCCHHHHHHHHHTCCC-CCBSCCCHHHHHHHHHHHTSSSC---------------SCTTSEEEEEEEECCCCCGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHC---------------CCCCCCEEEEEEEECCCCCCCC
T ss_conf             6753149999999975540-47752049999999997554420---------------5776521358999536898632


Q ss_pred             CCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH--CCCCCEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf             5348999999997898799999548977899999862--1898279817989999999999987420
Q gi|254781110|r  347 NVNTIKICDKAKENFIKIVTISINASPNGQRLLKTCV--SSPEYHYNVVNADSLIHVFQNISQLMVH  411 (420)
Q Consensus       347 ~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~ca--s~~~~yf~a~~~~~L~~aF~~Ia~~I~~  411 (420)
                       ......++.+|+.||+||+||+|.+.+.+ .|+.+|  ++++++|.+++.++|.++++.|.+.|=.
T Consensus       133 -~~~~~~a~~l~~~gi~i~~igiG~~~~~~-~l~~ia~~~~~~~~~~~~~~~~l~~~~~~i~~~iC~  197 (202)
T 1ijb_A          133 -RNFVRYVQGLKKKKVIVIPVGIGPHANLK-QIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCD  197 (202)
T ss_dssp             -TTHHHHHHHHHHTTEEEEEEEESTTSCHH-HHHHHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHCCCEEEEEEECCCCCHH-HHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCC
T ss_conf             -44999999998679889999967846999-999997379976189948999999999999998628


No 15 
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.41  E-value=1.1e-11  Score=93.25  Aligned_cols=150  Identities=15%  Similarity=0.075  Sum_probs=109.8

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC-CCCCCC
Q ss_conf             2012210223242233578766667534676653067889998999985104678765543022320487643-124457
Q gi|254781110|r  192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE-KNIEPS  270 (420)
Q Consensus       192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt  270 (420)
                      -+++++|.|+||...               +..++|++.+++++..+++.+....+   ..++++..|.+... ...+++
T Consensus         4 a~viviD~S~SM~~~---------------D~~p~Rl~~ak~a~~~li~~~~~~~~---~~~vg~v~~~~~~~~~~~~~~   65 (192)
T 2x5n_A            4 ATMILIDNSEWMING---------------DYIPTRFEAQKDTVHMIFNQKINDNP---ENMCGLMTIGDNSPQVLSTLT   65 (192)
T ss_dssp             EEEEEECCSGGGGCT---------------TSSSCHHHHHHHHHHHHHHHHHHHCT---TCEEEEEECCTTSCCEEEEEE
T ss_pred             EEEEEEECCHHHCCC---------------CCCCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEEECCCCCCCCCCCC
T ss_conf             999999898554378---------------98978999999999999998764597---774999860576430147884


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf             78488999999864046788765388999999861310123345543347767787766624899606867777765348
Q gi|254781110|r  271 WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT  350 (420)
Q Consensus       271 ~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~  350 (420)
                      .+.......++.   ..++|+|+...|+..|+..|...                ......+.+++++||..+...  ...
T Consensus        66 ~~~~~~~~~i~~---l~~~G~T~l~~al~~A~~~l~~~----------------~~~~~~~~iil~tdg~~~~~~--~~~  124 (192)
T 2x5n_A           66 RDYGKFLSAMHD---LPVRGNAKFGDGIQIAQLALKHR----------------ENKIQRQRIVAFVGSPIVEDE--KNL  124 (192)
T ss_dssp             SCHHHHHHHHTT---CCCCSCCCHHHHHHHHHHHHHTC----------------SCTTSEEEEEEEECSCCSSCH--HHH
T ss_pred             HHHHHHHHHHCC---CCCCCCCCCCHHHHHHHHHHHHH----------------HHCCCCEEEEEEECCCCCCCH--HHH
T ss_conf             089999987402---34468765227999999999862----------------110465069999688975306--789


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCHHHHHHH
Q ss_conf             9999999978987999995489778999998
Q gi|254781110|r  351 IKICDKAKENFIKIVTISINASPNGQRLLKT  381 (420)
Q Consensus       351 ~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~  381 (420)
                      ...++.+|+.||+||+||||.+.+... |+.
T Consensus       125 ~~~a~~~~~~~i~i~~Ig~G~~~~~~~-l~~  154 (192)
T 2x5n_A          125 IRLAKRMKKNNVAIDIIHIGELQNESA-LQH  154 (192)
T ss_dssp             HHHHHHHHHTTEEEEEEEESCC---CH-HHH
T ss_pred             HHHHHHHCCCCCEEEEEEEECCCCHHH-HHH
T ss_conf             999998513575079999717678799-999


No 16 
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.16  E-value=5.8e-10  Score=81.96  Aligned_cols=151  Identities=19%  Similarity=0.201  Sum_probs=105.3

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf             44320122102232422335787666675346766530678899989999851046787655430223204876431244
Q gi|254781110|r  189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIE  268 (420)
Q Consensus       189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (420)
                      ...|+.|++|.|+||.                    ...++..++.+..+++.+...   .+..+++...|+.......+
T Consensus        16 ~~lDivfvlD~S~Sm~--------------------~~~~~~~k~~v~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~~   72 (178)
T 2xgg_A           16 NQLDICFLIDSSGSIG--------------------IQNFRLVKQFLHTFLMVLPIG---PEEVNNAVVTYSTDVHLQWD   72 (178)
T ss_dssp             TCEEEEEEEECCTTTC--------------------HHHHHHHHHHHHHHHHHSCBS---TTSEEEEEEEESSSEEEEEC
T ss_pred             CCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEECCCCEEEEEE
T ss_conf             9876999995889988--------------------489999999999999985035---76139998740443036640


Q ss_pred             CCCCHH----HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             577848----8999999864046788765388999999861310123345543347767787766624899606867777
Q gi|254781110|r  269 PSWGTE----KVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF  344 (420)
Q Consensus       269 lt~~~~----~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~  344 (420)
                      +.....    .....+..+  ....++++...++.++...+.....             ...++.+|++|++|||+.+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~vviliTDG~~~~~  137 (178)
T 2xgg_A           73 LQSPNAVDKQLAAHAVLDM--PYKKGSTNTSDGLKACKQILFTGSR-------------PGREHVPKLVIGMTDGESDSD  137 (178)
T ss_dssp             TTSGGGSCHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHHHHCCC-------------TTCTTSCEEEEEEESSCCCHH
T ss_pred             CCCCCCHHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHCC-------------CCCCCCCEEEEEEECCCCCCC
T ss_conf             2443104299999999862--3023655078999999998753303-------------786523013699843887887


Q ss_pred             CCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHH
Q ss_conf             7653489999999978987999995489778999998
Q gi|254781110|r  345 KSNVNTIKICDKAKENFIKIVTISINASPNGQRLLKT  381 (420)
Q Consensus       345 ~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~  381 (420)
                         ......++.+|+.||+||+||+|...+ .+++..
T Consensus       138 ---~~~~~~a~~lk~~gi~I~~iGiG~~~~-~ell~~  170 (178)
T 2xgg_A          138 ---FRTVRAAKEIRELGGIVTVLAVGHYVA-AALVPR  170 (178)
T ss_dssp             ---HHHSHHHHHHHHTTCEEEEEECC-----------
T ss_pred             ---CCHHHHHHHHHHCCCEEEEEEECCCCH-HHCCCC
T ss_conf             ---379999999997899899999787524-425666


No 17 
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.12  E-value=4.4e-10  Score=82.75  Aligned_cols=171  Identities=13%  Similarity=0.108  Sum_probs=119.5

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      ..|+.|++|.|+||.                    ..+++..+..+..+++.+..     ...++++..|+.......++
T Consensus         2 ~~DivfllD~S~Sm~--------------------~~~f~~~k~~~~~~i~~l~~-----~~~~~~v~~~~~~~~~~~~~   56 (179)
T 1mjn_A            2 NVDLVFLFDGSMSLQ--------------------PDEFQKILDFMKDVMKKCSN-----TSYQFAAVQFSTSYKTEFDF   56 (179)
T ss_dssp             CEEEEEEEECBTTCC--------------------HHHHHHHHHHHHHHHHHTTT-----SSEEEEEEEESSSEEEEECH
T ss_pred             CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEEEECCEECCCC
T ss_conf             769999996889998--------------------79999999999999997375-----77669999986021111352


Q ss_pred             CCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             778--488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r  270 SWG--TEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN  347 (420)
Q Consensus       270 t~~--~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~  347 (420)
                      ...  .......+..+  ....|+|+...++.++...+......             ..+..+|++|++|||+.+.....
T Consensus        57 ~~~~~~~~~~~~i~~~--~~~~g~~~~~~al~~a~~~~~~~~~~-------------~r~~~~k~ivllTDG~~~~~~~~  121 (179)
T 1mjn_A           57 SDYVKRKDPDALLKHV--KHMLLLTNTFGAINYVATEVFREELG-------------ARPDATKVLIIITDGEATDSGNI  121 (179)
T ss_dssp             HHHHHHCCHHHHHTTC--CCCCBCCCHHHHHHHHHHHTSSGGGT-------------CCTTSEEEEEEEESSCCSSCSCC
T ss_pred             CCCCCHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHC-------------CCCCCCEEEEEECCCCCCCCHHH
T ss_conf             1204699999987512--55789832788999999998545306-------------89987148999807998860689


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHH
Q ss_conf             348999999997898799999548977---899999862189--82798179899999999999874
Q gi|254781110|r  348 VNTIKICDKAKENFIKIVTISINASPN---GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLM  409 (420)
Q Consensus       348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~---~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I  409 (420)
                               .+..++.++.++++....   ....|+..|+.|  .|+|.+++-++|.+.+++|.++|
T Consensus       122 ---------~~~~~~~~~~~~i~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~I  179 (179)
T 1mjn_A          122 ---------DAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI  179 (179)
T ss_dssp             ---------GGGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHHHHHC
T ss_pred             ---------HHHHCCEEEEEEEEECCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf             ---------9982986889999946886017999999857998633998799999999999997249


No 18 
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.96  E-value=4.4e-11  Score=89.31  Aligned_cols=169  Identities=18%  Similarity=0.161  Sum_probs=110.3

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC-CC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312-44
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN-IE  268 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  268 (420)
                      ..++.|++|.||||.                    ..|++.++.++..++.....     ...+.+++.|.+..... .+
T Consensus         5 ~~~iv~vlD~SGSM~--------------------~~~~~~~k~~~~~~l~~~~~-----~~d~~~~~~f~~~~~~~~~~   59 (189)
T 2x31_A            5 DRVLIFAVDASGSAA--------------------VARLSEAKGAVELLLGRAYA-----ARDHVSLITFRGTAAQVLLQ   59 (189)
T ss_dssp             CCEEEEEEECCTTSC--------------------C--CHHHHHHHHHHHHHSCT-----TTSCCCEEEESBSCCCBCTT
T ss_pred             CCEEEEEEEECCCCC--------------------CHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEEEECCCCCCCC
T ss_conf             746999998175789--------------------26999999999999997256-----89679999999324313588


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             57784889999998640467887653889999998613101233455433477677877666248996068677777653
Q gi|254781110|r  269 PSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNV  348 (420)
Q Consensus       269 lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~  348 (420)
                      ++.+....+..+..+   .+.|+|+...++..+++.+...+                .+...+++|++|||.+|......
T Consensus        60 ~~~~~~~~~~~~~~~---~~~GgT~~~~al~~a~~~~~~~~----------------~~~~~~~iillTDG~~~~~~~~~  120 (189)
T 2x31_A           60 PSRSLTQTKRQLQGL---PGGGGTPLASGMEMAMVTAKQAR----------------SRGMTPTIALLTDGRGNIALDGT  120 (189)
T ss_dssp             TCSCHHHHHHHHHHC---CCCBCCCCHHHHHHHHHHHHTCT----------------TTCSSEEEEECCBSCCSSCCTHH
T ss_pred             CCCCHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHC----------------CCCCCCEEEEECCCCCCCCCCCC
T ss_conf             746899999998534---45798617899999999999722----------------45887779996479877687860


Q ss_pred             HHH--------HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH-CCCCCEEEECCH--HHHHHHHHH
Q ss_conf             489--------99999997898799999548977899999862-189827981798--999999999
Q gi|254781110|r  349 NTI--------KICDKAKENFIKIVTISINASPNGQRLLKTCV-SSPEYHYNVVNA--DSLIHVFQN  404 (420)
Q Consensus       349 ~~~--------~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~ca-s~~~~yf~a~~~--~~L~~aF~~  404 (420)
                      ...        ..+..++..||.+++|+++....  ..|+..| .++|.||...+.  ++|.+++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~gi~~~~i~~g~~~~--~~l~~iA~~~gG~y~~~~~~~~~~l~~~~~~  185 (189)
T 2x31_A          121 ANRELAGEQATKVARAIRASGMPAVIIDTAMRPN--PALVDLARTMDAHYIALPRATAHKMADVLGA  185 (189)
T ss_dssp             HHHGGGTCCCEEEEECTGGGGSCCTHHHHHHSSC--SSSCSTTTEEEESSTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH--HHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
T ss_conf             4589999999999999872698379984797876--9999999761999997599999999999999


No 19 
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=98.86  E-value=1.7e-09  Score=79.00  Aligned_cols=166  Identities=13%  Similarity=0.119  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCH--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             67889998999985104678765543022320487643124457784--8899999986404678876538899999986
Q gi|254781110|r  227 KMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSWGT--EKVRQYVTRDMDSLILKPTDSTPAMKQAYQI  304 (420)
Q Consensus       227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~--~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~  304 (420)
                      -++..++-+..++..+.     ....+++++.|++.......+....  ......++.+.  ...|.|+...||..+...
T Consensus       147 df~~~k~f~~~v~~~f~-----~~~~qvg~vqys~~~~~~f~l~d~~~~~~~~~~v~~i~--~~~g~T~Ta~ai~~~~~~  219 (1095)
T 3k6s_A          147 NFATMMNFVRAVISQFQ-----RPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVH--QLQGFTYTATAIQNVVHR  219 (1095)
T ss_dssp             HHHHHHHHHHHHHHSSC-----SSSEEEEEEEESSSEEEEECSHHHHSCSCGGGGTTTCC--CCCSCBCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHCC-----CCCEEEEEEEECCCEEEEEEHHHCCCCCCHHHHHHHEE--ECCCCCCHHHHHHHHHHH
T ss_conf             06899999999986246-----67549999961373258887034333302678754146--136743078889999997


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC---CHHHHHHH
Q ss_conf             131012334554334776778776662489960686777776534899999999789879999954897---78999998
Q gi|254781110|r  305 LTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASP---NGQRLLKT  381 (420)
Q Consensus       305 L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~~---~~~~~l~~  381 (420)
                      +.....             ...++.+|+||++|||+-+....  ......+.++..||.+|.||++...   ....-|+.
T Consensus       220 ~f~~~~-------------g~r~~a~kv~IviTDG~s~~d~~--~l~~~i~~~~~~gI~~~aIGvg~~~~~~~~~~eL~~  284 (1095)
T 3k6s_A          220 LFHASY-------------GARRDAAKILIVITDGKKEGDSL--DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELND  284 (1095)
T ss_dssp             TTSTTT-------------TCCSSSEEEEEEEESSCCBSCSS--CHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHT
T ss_pred             HHHHHH-------------CCCCCCCEEEEEEECCCCCCCCC--CHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHH
T ss_conf             631642-------------68889841799992686456732--034444458648928999972543256433535421


Q ss_pred             HHCCCC--CEEEECCHHHHHHHHHHHHHHHHCCEE
Q ss_conf             621898--279817989999999999987420255
Q gi|254781110|r  382 CVSSPE--YHYNVVNADSLIHVFQNISQLMVHRKY  414 (420)
Q Consensus       382 cas~~~--~yf~a~~~~~L~~aF~~Ia~~I~~lr~  414 (420)
                      .|+.|+  ++|.+++.++|.++.+.+.+.|..+..
T Consensus       285 iAs~p~~~~~f~v~~~~aL~~i~~~L~~~i~~ieg  319 (1095)
T 3k6s_A          285 IASKPSQEHIFKVEDFDALKDIQNQLKEKIFAIEG  319 (1095)
T ss_dssp             TSCSSTTTSCCCBSCSGGGGSSTTTHHHHHHTCCC
T ss_pred             HHCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEC
T ss_conf             20588740389935557766777764165256454


No 20 
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.73  E-value=1.5e-07  Score=66.35  Aligned_cols=160  Identities=13%  Similarity=0.134  Sum_probs=101.0

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC-CC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312-44
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN-IE  268 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  268 (420)
                      +.|+.|++|.||||.                     .+++.+++.+..+++.+....   ...|++++.|.+..... .+
T Consensus         3 pvDl~fviD~SgSM~---------------------~~i~~~k~~~~~l~~~l~~~~---~~~r~g~v~f~d~~~~~~~~   58 (212)
T 2iue_A            3 SVDLYFLMGLSGSAQ---------------------GHLSNVQTLGSDLLKALNEIS---RSGRIGFGSIVNMTFQHILK   58 (212)
T ss_dssp             CEEEEEEEECCGGGT---------------------TTHHHHHHHHHHHHHHHHHHC---SCEEEEEEEESSSCEEEEEE
T ss_pred             CEEEEEEEECCCCHH---------------------HHHHHHHHHHHHHHHHHHHCC---CCEEEEEEECCCCCCCCCCC
T ss_conf             468999998880526---------------------799999999999999997269---87089999705643433465


Q ss_pred             CCCCHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             57784889999998640467-88765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r  269 PSWGTEKVRQYVTRDMDSLI-LKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN  347 (420)
Q Consensus       269 lt~~~~~~~~~i~~~~~~~~-~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~  347 (420)
                      +|.+...+...++.+..... .++++...||.++...+...+                .+...|++|++|||..+.....
T Consensus        59 ~t~~~~~~~~~i~~~~~~gg~d~~e~~~~al~~a~~~~~~~~----------------~~~~~~~ivl~tD~~~~~~~~~  122 (212)
T 2iue_A           59 LTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIG----------------WRNGTRFLVLVTDNDFHLAKDK  122 (212)
T ss_dssp             EESCHHHHHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHT----------------CCSSEEEEEEECSSCBCCTTGG
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC----------------CCCCCEEEEEEECCCCCCCCCC
T ss_conf             576399999998630214898885069999999998766437----------------7777359999968986556630


Q ss_pred             ----------------------------CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH-CCCCCEEEE
Q ss_conf             ----------------------------348999999997898799999548977899999862-189827981
Q gi|254781110|r  348 ----------------------------VNTIKICDKAKENFIKIVTISINASPNGQRLLKTCV-SSPEYHYNV  392 (420)
Q Consensus       348 ----------------------------~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~ca-s~~~~yf~a  392 (420)
                                                  ......+..++.++|.+....-   .......+.-+ ..++.++..
T Consensus       123 ~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~---~~~~~~~~~l~~~~~g~~v~~  193 (212)
T 2iue_A          123 TLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVP---SRMVKTYEKLTTFIPKLTIGE  193 (212)
T ss_dssp             GGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHHHHHHTCEEEEEEE---HHHHHHHHHHHHHSTTCEEEE
T ss_pred             HHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEC---CCHHHHHHHHHHHCCCCCHHH
T ss_conf             24445311587157525653567776777799999999863975899974---532789999999738741266


No 21 
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.93  E-value=0.00053  Score=43.19  Aligned_cols=146  Identities=11%  Similarity=0.054  Sum_probs=91.6

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC-------
Q ss_conf             2012210223242233578766667534676653067889998999985104678765543022320487643-------
Q gi|254781110|r  192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE-------  264 (420)
Q Consensus       192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  264 (420)
                      -+.+++|++++|.....+              ..++++.++.++..++...-...   ...++|++.|++...       
T Consensus         9 aiv~~iDvs~sM~~~~~~--------------~~s~~~~a~~~~~~~~~~ki~~~---~~D~vglvlfgt~~t~N~l~~~   71 (565)
T 1jey_B            9 AVVLCMDVGFTMSNSIPG--------------IESPFEQAKKVITMFVQRQVFAE---NKDEIALVLFGTDGTDNPLSGG   71 (565)
T ss_dssp             EEEEEEECCGGGGCCBTT--------------BCCHHHHHHHHHHHHHHHHHHTT---CCCEEEEEEESCSSCBSTTCTT
T ss_pred             EEEEEEECCHHHCCCCCC--------------CCCHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCCCCCCCCC
T ss_conf             199999898677676889--------------99979999999999999873389---9987999998057888755544


Q ss_pred             -------CCCCCCC-CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             -------1244577-84889999998640467887653889999998613101233455433477677877666248996
Q gi|254781110|r  265 -------KNIEPSW-GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFL  336 (420)
Q Consensus       265 -------~~~~lt~-~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~  336 (420)
                             ...++.. +...++. +..+. ....+.++...+|.++..+|......              ....++.||++
T Consensus        72 ~~~~~i~v~~~l~~~~~~~l~~-l~~~~-~~~~~~~d~~~aL~va~~~l~~~~~~--------------~k~~~~~Ivl~  135 (565)
T 1jey_B           72 DQYQNITVHRHLMLPDFDLLED-IESKI-QPGSQQADFLDALIVSMDVIQHETIG--------------KKFEKRHIEIF  135 (565)
T ss_dssp             TCSTTEEEEEEEECCCHHHHHH-HHTTC-CCCSSCCCHHHHHHHHHHHHHHHSSS--------------SCCSEEEEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHH-HHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHC--------------CCCCCEEEEEE
T ss_conf             5777559974588999999999-98653-68877878799999999999987502--------------55562489999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             068677777653489999999978987999995489
Q gi|254781110|r  337 TDGENNNFKSNVNTIKICDKAKENFIKIVTISINAS  372 (420)
Q Consensus       337 TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~  372 (420)
                      |||......  .....+.+.+++.+|.+..|++...
T Consensus       136 Td~~~p~~~--~~~~~i~~~l~~~~i~L~vi~~~~~  169 (565)
T 1jey_B          136 TDLSSRFSK--SQLDIIIHSLKKCDISLQFFLPFSL  169 (565)
T ss_dssp             CCCCSCCCC--TTHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             ECCCCCCCH--HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             279988687--8999999999865966999703666


No 22 
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=97.78  E-value=0.00055  Score=43.07  Aligned_cols=137  Identities=16%  Similarity=0.136  Sum_probs=78.1

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r  191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS  270 (420)
Q Consensus       191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt  270 (420)
                      ..+.+.+|+||||.+....+..           ..+..+.+  +.-.++-.       ....++.++.|++.... .+++
T Consensus       363 ~r~lv~iDvSGSM~~~~~~~~~-----------~~~~~~~a--~lla~~~~-------r~~~~~~vv~Fs~~~~~-v~l~  421 (535)
T 2nvo_A          363 TRHLLALDVSGSMTCGDVAGVP-----------GLTPNMAA--AAMSLIAL-------RTEPDALTMGFAEQFRP-LGIT  421 (535)
T ss_dssp             SEEEEEECCSGGGGSCCGGGCT-----------TCCHHHHH--HHHHHHHH-------HHSSEEEEEEEBSSEEE-CCCC
T ss_pred             CCEEEEEECCCCCCCCCCCCCC-----------CHHHHHHH--HHHHHHHH-------CCCCCEEEEEECCCEEE-ECCC
T ss_conf             7379999765556664237875-----------37799999--99999980-------75898079842796587-1788


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf             78488999999864046788765388999999861310123345543347767787766624899606867777765348
Q gi|254781110|r  271 WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT  350 (420)
Q Consensus       271 ~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~  350 (420)
                      .+.+ +...+..+. ..+.|+|++..+|.|+.+.-.                      ..+.+|++|||+.+.+... ..
T Consensus       422 ~~~s-l~~~~~~~~-~~~~ggT~~~~~l~~a~~~~~----------------------~~D~iIllTD~e~~~g~~~-p~  476 (535)
T 2nvo_A          422 PRDT-LESAMQKAQ-SVSFGGTDCAQPILWAAQERL----------------------DVDTFVVYTDNETWAGQVH-PT  476 (535)
T ss_dssp             TTCC-HHHHHHHTC-CSSBCCCCTTHHHHHHHHTTC----------------------CCSEEEEEESSCCCCCSSC-HH
T ss_pred             CCCC-HHHHHHHHH-HCCCCCCHHHHHHHHHHHCCC----------------------CCCEEEEEECCCCCCCCCC-HH
T ss_conf             8864-999999986-157899669999999985654----------------------5898999808997789999-99


Q ss_pred             HHHH--HHHHHCCCEEEEEEECCCC
Q ss_conf             9999--9999789879999954897
Q gi|254781110|r  351 IKIC--DKAKENFIKIVTISINASP  373 (420)
Q Consensus       351 ~~~c--~~~k~~gi~i~tIgf~~~~  373 (420)
                      ..+-  ....+.+.++++|++....
T Consensus       477 ~al~~yr~~~~~~~klv~v~l~~~~  501 (535)
T 2nvo_A          477 VALDQYAQKMGRAPKLIVVGLTATE  501 (535)
T ss_dssp             HHHHHHHHHHSCCCEEEEEETTCSC
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf             9999999971899718999803788


No 23 
>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=97.72  E-value=0.0005  Score=43.37  Aligned_cols=146  Identities=15%  Similarity=0.165  Sum_probs=84.7

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC-
Q ss_conf             4434432012210223242233578766667534676653067889998999985104678765543022320487643-
Q gi|254781110|r  186 GERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE-  264 (420)
Q Consensus       186 ~~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  264 (420)
                      ..+...|+.|..|.++||..                     .++.+++....+.+.+....   ...|+|+..|-+... 
T Consensus       107 ~~~yPvDL~fLmD~TgSM~d---------------------dI~~lk~~~~~l~~~l~~~t---~~~rlGfgsf~Dk~~~  162 (461)
T 2vdr_B          107 VEDYPVDIYYLMDLSYSMKD---------------------DLWSIQNLGTKLATQMRKLT---SNLRIGFGAFVDKPVS  162 (461)
T ss_dssp             CSCCCEEEEEEEECSGGGGG---------------------GHHHHHHHHHHHHHHHHHHC---TTEEEEEEEECCCSST
T ss_pred             CCCCCCCEEEEEECCCCHHH---------------------HHHHHHHHHHHHHHHHHHHC---CCCEEEEEEEEEECCC
T ss_conf             67787447999947746699---------------------99999999999999998528---8847999998973477


Q ss_pred             -----------------------------CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-HCCCCCCCCC
Q ss_conf             -----------------------------1244577848899999986404678876538899999986-1310123345
Q gi|254781110|r  265 -----------------------------KNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQI-LTSDKKRSFF  314 (420)
Q Consensus       265 -----------------------------~~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~-L~~~~~~~~~  314 (420)
                                                   ...+||.+..++.+.++.+.   +.||-..+++..-|... +.-.+.-.| 
T Consensus       163 p~~~~~~~~~l~~Pc~~~~~~c~~~f~~~~~l~lT~d~~~F~~~V~~~~---~sGggD~PE~~~dAL~qa~vc~~~igW-  238 (461)
T 2vdr_B          163 PYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQS---VSRNRDAPEGGFDAIMQATVCDEKIGW-  238 (461)
T ss_dssp             TTSCCCSTHHHHCTTGGGTSCCCCCCSEEEEEEEESCHHHHHHHHHTCC---CCCCSBSSBCHHHHHHHHHHCHHHHTC-
T ss_pred             CCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCEE---CCCCCCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf             6444466655048664678776787330452468878999999875036---547986776689999999986310787-


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCC------------------------CC-----CCCHHHHHHHHHHHCCCE-E
Q ss_conf             54334776778776662489960686777------------------------77-----653489999999978987-9
Q gi|254781110|r  315 TNFFRQGVKIPSLPFQKFIIFLTDGENNN------------------------FK-----SNVNTIKICDKAKENFIK-I  364 (420)
Q Consensus       315 ~~~~~~~~~~~~~~~~k~iil~TDG~~~~------------------------~~-----~~~~~~~~c~~~k~~gi~-i  364 (420)
                                 +++.+|++|++||.-.+.                        +.     .......+.+.+++++|. |
T Consensus       239 -----------R~~a~rilvliTDA~~H~agDgkl~giv~pnDg~Chl~~~~~y~~s~~~DYPSv~ql~~~l~e~~i~pI  307 (461)
T 2vdr_B          239 -----------RNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLI  307 (461)
T ss_dssp             -----------CTTSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEE
T ss_pred             -----------CCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf             -----------868759999989788433687544104438876315379887665555778999999999986496799


Q ss_pred             EEEEEC
Q ss_conf             999954
Q gi|254781110|r  365 VTISIN  370 (420)
Q Consensus       365 ~tIgf~  370 (420)
                      |.|.-.
T Consensus       308 FAVt~~  313 (461)
T 2vdr_B          308 FAVTEN  313 (461)
T ss_dssp             EEEEGG
T ss_pred             EEECCC
T ss_conf             996553


No 24 
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=97.62  E-value=0.0034  Score=37.92  Aligned_cols=134  Identities=13%  Similarity=0.111  Sum_probs=73.9

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r  191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS  270 (420)
Q Consensus       191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt  270 (420)
                      ..+...+|+||||.....+.             ..+..+.+.--.-.+... .        ....++.|++...+ .+++
T Consensus       369 ~r~liavDvSGSM~~~~~g~-------------~~~~~~~aa~la~~~~~~-~--------~~~~vv~Fs~~~~~-l~~~  425 (538)
T 1yvr_A          369 KRFLLAIDVSASMNQRVLGS-------------ILNASVVAAAMCMLVART-E--------KDSHMVAFSDEMLP-CPIT  425 (538)
T ss_dssp             CCEEEEEECSGGGGSBSTTS-------------SCBHHHHHHHHHHHHHHH-C--------SSEEEEEESSSEEC-CSCC
T ss_pred             CEEEEEEECCCCCCCCCCCC-------------CCCHHHHHHHHHHHHHHH-C--------CCCEEEEECCCEEE-CCCC
T ss_conf             63899997645543744489-------------757999999999999985-7--------99879997693587-2777


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf             78488999999864046788765388999999861310123345543347767787766624899606867777765348
Q gi|254781110|r  271 WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT  350 (420)
Q Consensus       271 ~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~  350 (420)
                      ... .+...+..+. ..++|+|++..+|.|+.+...                      .-+++|++|||+.+.+.... .
T Consensus       426 ~~~-~l~~~~~~~~-~~~~ggT~~~~~i~~a~~~~~----------------------~~D~~IvlTD~e~~~g~~~p-~  480 (538)
T 1yvr_A          426 VNM-LLHEVVEKMS-DITMGSTDCALPMLWAQKTNT----------------------AADIFIVFTDCETNVEDVHP-A  480 (538)
T ss_dssp             TTS-CHHHHHHHHT-TCCCSCCCTTHHHHHHHHTTC----------------------CCSEEEEEECCCCCSSSCCH-H
T ss_pred             HHH-HHHHHHHHHH-CCCCCCCCHHHHHHHHHHCCC----------------------CCCEEEEEECCCCCCCCCCH-H
T ss_conf             101-4999999984-367898618999999996155----------------------68989998179977898899-9


Q ss_pred             HHHHH--HHHHCCCEEEEEEECCC
Q ss_conf             99999--99978987999995489
Q gi|254781110|r  351 IKICD--KAKENFIKIVTISINAS  372 (420)
Q Consensus       351 ~~~c~--~~k~~gi~i~tIgf~~~  372 (420)
                      ..+-+  ...+.+.++++|++...
T Consensus       481 ~al~~Yr~k~~~~ak~v~v~l~~~  504 (538)
T 1yvr_A          481 TALKQYREKMGIPAKLIVCAMTSN  504 (538)
T ss_dssp             HHHHHHHHHHTCCCEEEEEECSSS
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999998489975999985689


No 25 
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=97.46  E-value=0.00093  Score=41.58  Aligned_cols=127  Identities=10%  Similarity=0.066  Sum_probs=69.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             3124457784889999998640467887653889999998613-----10123345543347767787766624899606
Q gi|254781110|r  264 EKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILT-----SDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTD  338 (420)
Q Consensus       264 ~~~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~-----~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TD  338 (420)
                      ....+||.+...+.+.+++..   .+|+-..++|-.-|.....     =+|                ++..+|++|+.||
T Consensus       191 ~~~~~lt~~~~~f~~~v~~~~---~s~n~d~pe~~~dal~q~~vc~~~igw----------------r~~~~~~~v~~tD  251 (690)
T 3fcs_B          191 KHVLTLTDQVTRFNEEVKKQS---VSRNRDAPEGGFDAIMQATVCDEKIGW----------------RNDASHLLVFTTD  251 (690)
T ss_dssp             EEEEEEESCHHHHHHHHTTCC---CCCCSSSSBCHHHHHHHHHHCHHHHTC----------------CSSSEEEEEEEES
T ss_pred             EEECCCCCCHHHHHHHHHHEE---CCCCCCCCCHHHHHHHHHHHCCCCCCC----------------CCCCEEEEEEEEC
T ss_conf             465456667899999875255---116877875046678776523122356----------------7897699999806


Q ss_pred             CCCCCC------------------------C-----CCCHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf             867777------------------------7-----653489999999978987-9999954897789999986218982
Q gi|254781110|r  339 GENNNF------------------------K-----SNVNTIKICDKAKENFIK-IVTISINASPNGQRLLKTCVSSPEY  388 (420)
Q Consensus       339 G~~~~~------------------------~-----~~~~~~~~c~~~k~~gi~-i~tIgf~~~~~~~~~l~~cas~~~~  388 (420)
                      .-.+..                        .     .......+.+++++++|. ||.|.-.....-+.|-+.-. ...-
T Consensus       252 ~~~H~agDg~l~gi~~pnd~~chl~~~~~y~~~~~~dyPs~~q~~~~l~~~~i~~ifavt~~~~~~y~~l~~~~~-~~~~  330 (690)
T 3fcs_B          252 AKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIP-GTTV  330 (690)
T ss_dssp             SCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHST-TCEE
T ss_pred             CCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCC-CCEE
T ss_conf             731125665423563167761140798852556767789999999999872967999976654006899997548-7526


Q ss_pred             EEEECCHH----HHHHHHHHHHHHHH
Q ss_conf             79817989----99999999998742
Q gi|254781110|r  389 HYNVVNAD----SLIHVFQNISQLMV  410 (420)
Q Consensus       389 yf~a~~~~----~L~~aF~~Ia~~I~  410 (420)
                      .-.+.+..    =|.++|++|+..|.
T Consensus       331 ~~l~~dssnv~~li~~~y~~~~s~v~  356 (690)
T 3fcs_B          331 GVLSMDSSNVLQLIVDAYGKIRSKVE  356 (690)
T ss_dssp             EEECTTCTTHHHHHHHHHHHHTTCEE
T ss_pred             EECCCCCHHHHHHHHHHHHHHHCEEE
T ss_conf             87057861599999999987526467


No 26 
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=95.96  E-value=0.012  Score=34.36  Aligned_cols=126  Identities=12%  Similarity=0.131  Sum_probs=66.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             43124457784889999998640467887653889999998613-----1012334554334776778776662489960
Q gi|254781110|r  263 VEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILT-----SDKKRSFFTNFFRQGVKIPSLPFQKFIIFLT  337 (420)
Q Consensus       263 ~~~~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~-----~~~~~~~~~~~~~~~~~~~~~~~~k~iil~T  337 (420)
                      ...+.+||.+...+.+.+++..   .+|+-..++|-.-|.....     =+|+                 +.+|++|+.|
T Consensus       182 ~~~~~~lt~~~~~f~~~~~~~~---~~~n~d~pe~~~da~~q~~~c~~~igwr-----------------~~~~~~~~~t  241 (687)
T 3k6s_B          182 FRHVLKLTNNSNQFQTEVGKQL---ISGNLDAPEGGLDAMMQVAACPEEIGWR-----------------NVTRLLVFAT  241 (687)
T ss_dssp             CEEEEEEESCSHHHHHHHHTSC---CCCCSSSSCCHHHHHHHHTTCHHHHCCC-----------------SSCCEEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHEE---EECCCCCCCCHHHHHHHHHHCCCCCCCC-----------------CCEEEEEEEC
T ss_conf             1542256677899999875167---0357768650166888877502223645-----------------7548999981


Q ss_pred             CCCCCCCC----------------------------CCCHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf             68677777----------------------------653489999999978987-9999954897789999986218982
Q gi|254781110|r  338 DGENNNFK----------------------------SNVNTIKICDKAKENFIK-IVTISINASPNGQRLLKTCVSSPEY  388 (420)
Q Consensus       338 DG~~~~~~----------------------------~~~~~~~~c~~~k~~gi~-i~tIgf~~~~~~~~~l~~cas~~~~  388 (420)
                      |.-.+..-                            .......+-++++.++|. ||.|.=..-.--+. |..--. ++.
T Consensus       242 d~~~h~agdg~l~gi~~pnd~~chl~~~~y~~~~~~dyps~~~~~~~~~~~~i~~ifavt~~~~~~y~~-l~~~~~-~~~  319 (687)
T 3k6s_B          242 DDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEK-LTEIIP-KSA  319 (687)
T ss_dssp             SSCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHH-HHHHSS-SCC
T ss_pred             CCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHH-HHHHCC-CCE
T ss_conf             687442676423104047887317048830356666778989999999864925999976644436899-997557-750


Q ss_pred             EE-EE---CCH-HHHHHHHHHHHHHHH
Q ss_conf             79-81---798-999999999998742
Q gi|254781110|r  389 HY-NV---VNA-DSLIHVFQNISQLMV  410 (420)
Q Consensus       389 yf-~a---~~~-~~L~~aF~~Ia~~I~  410 (420)
                      .= .+   .|- +=|.++|++|+..|.
T Consensus       320 ~~~l~~ds~ni~~li~~~y~~i~s~v~  346 (687)
T 3k6s_B          320 VGELSEDSSNVVQLIKNAYNKLSSRVF  346 (687)
T ss_dssp             EEECCTTCCSCGGGTTTHHHHHSSCCC
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHCEEE
T ss_conf             476146647799999999986513799


No 27 
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A*
Probab=64.07  E-value=5.6  Score=16.99  Aligned_cols=41  Identities=12%  Similarity=0.170  Sum_probs=15.7

Q ss_pred             CCEEEEEECCCCCCCCCC---CHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             624899606867777765---34899999999789879999954
Q gi|254781110|r  330 QKFIIFLTDGENNNFKSN---VNTIKICDKAKENFIKIVTISIN  370 (420)
Q Consensus       330 ~k~iil~TDG~~~~~~~~---~~~~~~c~~~k~~gi~i~tIgf~  370 (420)
                      .|.|+|+||+.+-.....   ......+..+++.||.+-.+.++
T Consensus       163 ~krI~lfTd~d~P~~~d~~~~~~~~~~~~dl~~~gI~i~~~~i~  206 (609)
T 1jey_A          163 HKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLK  206 (609)
T ss_dssp             EEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBC
T ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf             75799986899878885177999999999999709057773357


No 28 
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=54.88  E-value=8  Score=15.98  Aligned_cols=158  Identities=10%  Similarity=0.083  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC------------------------------------CCCCCCHHH
Q ss_conf             99899998510467876554302232048764312------------------------------------445778488
Q gi|254781110|r  232 KNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN------------------------------------IEPSWGTEK  275 (420)
Q Consensus       232 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~lt~~~~~  275 (420)
                      ....+.+...++.......+.++|+++|++.....                                    .++......
T Consensus       323 ~~~~~~i~~~L~~l~~~~~~~~VglItfd~~V~~y~l~~~~~~~~~~~~~~~~~~~~dl~~~f~p~~~~~l~~l~e~~~~  402 (926)
T 1m2v_B          323 ATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQN  402 (926)
T ss_dssp             HHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTTTHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEHHHHHHH
T ss_conf             99999999999746367877369999977848998357777764322467520241014540567875434336887999


Q ss_pred             HHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC-------
Q ss_conf             9999998640467---887653889999998613101233455433477677877666248996068677777-------
Q gi|254781110|r  276 VRQYVTRDMDSLI---LKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK-------  345 (420)
Q Consensus       276 ~~~~i~~~~~~~~---~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~-------  345 (420)
                      +...++.+.....   ...+..+.++..+...|....                    .| |++++.|-.+.+.       
T Consensus       403 i~~lL~~L~~~~~~~~~~~~~lG~Al~~a~~ll~~~g--------------------Gk-I~~f~sg~pt~G~G~l~~r~  461 (926)
T 1m2v_B          403 IETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG--------------------GK-IIVVSGTLPNLGIGKLQRRN  461 (926)
T ss_dssp             HHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTTC--------------------EE-EEEEESSCCCSSTTCCCCCC
T ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC--------------------CE-EEEEECCCCCCCCCCCCCCC
T ss_conf             9999984256406888873239999999999875479--------------------86-99994789877886342255


Q ss_pred             -----------------CCCHHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHHHCCCCCEEEE-----CCHHHHHHHH
Q ss_conf             -----------------6534899999999789879999954897-7899999862189827981-----7989999999
Q gi|254781110|r  346 -----------------SNVNTIKICDKAKENFIKIVTISINASP-NGQRLLKTCVSSPEYHYNV-----VNADSLIHVF  402 (420)
Q Consensus       346 -----------------~~~~~~~~c~~~k~~gi~i~tIgf~~~~-~~~~~l~~cas~~~~yf~a-----~~~~~L~~aF  402 (420)
                                       .+.--+.++..+.+.+|.|....+..+. +-..+-.-|..++|..|..     ....+..+-+
T Consensus       462 ~~~~~~~~~e~~~~~~~~~~fY~~la~~~~~~~isvdlF~~~~~~~dla~l~~l~~~TGG~i~~y~~f~~~~~~d~~~l~  541 (926)
T 1m2v_B          462 ESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFS  541 (926)
T ss_dssp             C----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             53334660344542462179999999999977907999980487677388777776348559981787644367789999


Q ss_pred             HHHHHHHH
Q ss_conf             99998742
Q gi|254781110|r  403 QNISQLMV  410 (420)
Q Consensus       403 ~~Ia~~I~  410 (420)
                      .++.+.+.
T Consensus       542 ~dl~~~~~  549 (926)
T 1m2v_B          542 TEFAKHIS  549 (926)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99997533


No 29 
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=51.79  E-value=7.6  Score=16.11  Aligned_cols=16  Identities=6%  Similarity=0.032  Sum_probs=9.6

Q ss_pred             HCCCEEEEEEECCCCC
Q ss_conf             7898799999548977
Q gi|254781110|r  359 ENFIKIVTISINASPN  374 (420)
Q Consensus       359 ~~gi~i~tIgf~~~~~  374 (420)
                      -.+...+.|-||-+.+
T Consensus       101 ~~~~~~~aiVFG~~a~  116 (157)
T 1kjn_A          101 ILNTETLAIIFDRDAD  116 (157)
T ss_dssp             HHCSEEEEEEECSCHH
T ss_pred             HHCCCEEEEEECCCCC
T ss_conf             7278748999337743


No 30 
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=48.49  E-value=10  Score=15.33  Aligned_cols=158  Identities=9%  Similarity=0.085  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC-----------------------------CCCCCCHHHHHH
Q ss_conf             788999899998510467876554302232048764312-----------------------------445778488999
Q gi|254781110|r  228 MAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN-----------------------------IEPSWGTEKVRQ  278 (420)
Q Consensus       228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~lt~~~~~~~~  278 (420)
                      ++.+.+++...++.+   + .....++|+++|++.....                             .++......+..
T Consensus       179 l~~~~~ai~~~l~~l---~-~~~~~~VglItf~~~V~~~~~~~~~~~~~~~v~~d~~~~~~p~~~~~l~~l~e~~~~i~~  254 (751)
T 3eh1_A          179 LTILCQSLLENLDKL---P-GDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKD  254 (751)
T ss_dssp             HHHHHHHHHHHTTTS---S-CCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGGGTSEETTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHC---C-CCCCEEEEEEEECCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHHHH
T ss_conf             999999999999747---7-887608999998997899846898665326741486312467876468437998999999


Q ss_pred             HHHHHHHCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC----------
Q ss_conf             9998640467---887653889999998613101233455433477677877666248996068677777----------
Q gi|254781110|r  279 YVTRDMDSLI---LKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK----------  345 (420)
Q Consensus       279 ~i~~~~~~~~---~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~----------  345 (420)
                      .++.+.....   ..++..+.++..+...|....                     -.++++++|-.+.+.          
T Consensus       255 ~L~~L~~~~~~~~~~~~~lg~Al~~a~~~l~~~g---------------------G~i~~f~~g~pt~GpG~l~~~~~~~  313 (751)
T 3eh1_A          255 LLNALPNMFTNTRETHSALGPALQAAFKLMSPTG---------------------GRVSVFQTQLPSLGAGLLQSREDPN  313 (751)
T ss_dssp             HHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTTC---------------------EEEEEEECSCCCSSTTCCCCCCCSC
T ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC---------------------CEEEEEECCCCCCCCCCEECCCCCC
T ss_conf             9985455414887764108999999999887329---------------------7599995679978898321266766


Q ss_pred             -------------CCCHHHHHHHHHHHCCCEEEEEEECCCCC-HHHHHHHHHCCCCCEEEECC------HHHHHHHHHHH
Q ss_conf             -------------65348999999997898799999548977-89999986218982798179------89999999999
Q gi|254781110|r  346 -------------SNVNTIKICDKAKENFIKIVTISINASPN-GQRLLKTCVSSPEYHYNVVN------ADSLIHVFQNI  405 (420)
Q Consensus       346 -------------~~~~~~~~c~~~k~~gi~i~tIgf~~~~~-~~~~l~~cas~~~~yf~a~~------~~~L~~aF~~I  405 (420)
                                   ....-..++..+.+.||.|....+..+.- -..+-.-|..++|..|..++      ..++...++++
T Consensus       314 ~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~l~~dl  393 (751)
T 3eh1_A          314 QRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDL  393 (751)
T ss_dssp             GGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             67854567651405789999999999769479999945877787998889864786599936866433657899999999


Q ss_pred             HHHHH
Q ss_conf             98742
Q gi|254781110|r  406 SQLMV  410 (420)
Q Consensus       406 a~~I~  410 (420)
                      .+.+.
T Consensus       394 ~~~l~  398 (751)
T 3eh1_A          394 KRYLT  398 (751)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             98755


No 31 
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A*
Probab=44.06  E-value=12  Score=14.90  Aligned_cols=23  Identities=17%  Similarity=0.057  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             89999999978987999995489
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINAS  372 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~~  372 (420)
                      +..++..+...||++.+|.-|.=
T Consensus       169 tr~lA~e~~~~gIrVN~V~PG~i  191 (261)
T 1gee_A          169 TETLALEYAPKGIRVNNIGPGAI  191 (261)
T ss_dssp             HHHHHHHHGGGTCEEEEEEECSB
T ss_pred             HHHHHHHHHHHCCEEEEEEECCC
T ss_conf             99999996354919999960979


No 32 
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=42.75  E-value=12  Score=14.77  Aligned_cols=24  Identities=13%  Similarity=-0.031  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999789879999954897
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINASP  373 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~~~  373 (420)
                      ++.++..+...||++.+|.-|.=.
T Consensus       166 t~~lA~el~~~gIrVN~I~PG~v~  189 (247)
T 2hq1_A          166 TKSIAKEFAAKGIYCNAVAPGIIK  189 (247)
T ss_dssp             HHHHHHHHGGGTEEEEEEEECSBC
T ss_pred             HHHHHHHHHCCCEEEEEEECCCCC
T ss_conf             999999972149699998549787


No 33 
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=40.11  E-value=13  Score=14.51  Aligned_cols=23  Identities=17%  Similarity=0.057  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             89999999978987999995489
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINAS  372 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~~  372 (420)
                      ++.++..+...||++..|.-|.=
T Consensus       186 tr~lA~e~~~~gIrVN~V~PG~i  208 (269)
T 3gk3_A          186 TKTLALETAKRGITVNTVSPGYL  208 (269)
T ss_dssp             HHHHHHHHGGGTEEEEEEEECSB
T ss_pred             HHHHHHHHHHCCCEEEEECCCCC
T ss_conf             99999988651958987634857


No 34 
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=39.56  E-value=14  Score=14.45  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=27.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0388569999999999999999999999999999
Q gi|254781110|r   17 SEKANFSIIFALSVMSFLLLIGFLIYVLDWHYKK   50 (420)
Q Consensus        17 ~~~G~vai~fal~l~~ll~~~g~aVD~~r~~~~k   50 (420)
                      ...|..++++.|+++.+++++.++|-++..-..|
T Consensus        46 ~~d~~~~~lYIL~vmgffgff~~gImlsyiRSKk   79 (138)
T 2k21_A           46 SGDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKK   79 (138)
T ss_dssp             CTTCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9998522679999999999999999998778875


No 35 
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=37.65  E-value=15  Score=14.26  Aligned_cols=159  Identities=11%  Similarity=0.087  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC------------------------------------CCCCCCHH
Q ss_conf             999899998510467876554302232048764312------------------------------------44577848
Q gi|254781110|r  231 LKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN------------------------------------IEPSWGTE  274 (420)
Q Consensus       231 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~lt~~~~  274 (420)
                      ++.........++..+....+.++|+++|++.....                                    .++.....
T Consensus       206 l~~~~~~i~~~L~~lp~~~~~~~Vg~Itfd~~v~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~p~~~~~lv~l~e~~~  285 (810)
T 1pcx_A          206 LATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQ  285 (810)
T ss_dssp             HHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTTTHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEHHHHHH
T ss_conf             99999999998751436787605999995882899965677776433334443244444233146787665120689799


Q ss_pred             HHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC------
Q ss_conf             89999998640467---887653889999998613101233455433477677877666248996068677777------
Q gi|254781110|r  275 KVRQYVTRDMDSLI---LKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK------  345 (420)
Q Consensus       275 ~~~~~i~~~~~~~~---~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~------  345 (420)
                      .+...++.+.....   ...+..+.++..|...|....                    .| +++++.|-.|.+.      
T Consensus       286 ~i~~lL~~L~~~~~~~~~~~~alG~Al~~a~~ll~~~g--------------------Gk-I~~f~s~~pt~GpG~l~~r  344 (810)
T 1pcx_A          286 NIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG--------------------GK-IIVVSGTLPNLGIGKLQRR  344 (810)
T ss_dssp             HHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTC--------------------EE-EEEEESSCCCSSTTCCCC-
T ss_pred             HHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHCCC--------------------CE-EEEEECCCCCCCCCCCCCC
T ss_conf             99999985545316988873229999999999874579--------------------86-9999577986788632104


Q ss_pred             ------------------CCCHHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHHHCCCCCEEE-----ECCHHHHHHH
Q ss_conf             ------------------6534899999999789879999954897-789999986218982798-----1798999999
Q gi|254781110|r  346 ------------------SNVNTIKICDKAKENFIKIVTISINASP-NGQRLLKTCVSSPEYHYN-----VVNADSLIHV  401 (420)
Q Consensus       346 ------------------~~~~~~~~c~~~k~~gi~i~tIgf~~~~-~~~~~l~~cas~~~~yf~-----a~~~~~L~~a  401 (420)
                                        .+..-+.++..+.+.||.|....+..+. +-..+-.-|..++|..|.     +....+..+-
T Consensus       345 ~~~~~~~~~~~~~~l~~~~~~fY~~la~~~~~~~isvDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~d~~~l  424 (810)
T 1pcx_A          345 NESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKF  424 (810)
T ss_dssp             -------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
T ss_conf             55444577345565325378999999999998793599986047777728888888745846998068664434578999


Q ss_pred             HHHHHHHHH
Q ss_conf             999998742
Q gi|254781110|r  402 FQNISQLMV  410 (420)
Q Consensus       402 F~~Ia~~I~  410 (420)
                      +.++.+.+.
T Consensus       425 ~~dl~~~l~  433 (810)
T 1pcx_A          425 STEFAKHIS  433 (810)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999998656


No 36 
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3itd_A
Probab=34.49  E-value=16  Score=13.94  Aligned_cols=24  Identities=4%  Similarity=0.072  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999789879999954897
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINASP  373 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~~~  373 (420)
                      ++.++..+...||+|..|.-|.=.
T Consensus       178 tk~lA~el~~~gIrVN~V~PG~i~  201 (270)
T 3is3_A          178 VRIFSKDCGDKKITVNAVAPGGTV  201 (270)
T ss_dssp             HHHHHHHHGGGTCEEEEEEECSBC
T ss_pred             HHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             999999857049299999609898


No 37 
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=32.30  E-value=18  Score=13.71  Aligned_cols=148  Identities=11%  Similarity=0.046  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHCCCC-CCCCCCCCEEEECCCCCCCC-----------------------------CCCCCCCHHHHH
Q ss_conf             788999899998510467-87655430223204876431-----------------------------244577848899
Q gi|254781110|r  228 MAALKNALLLFLDSIDLL-SHVKEDVYMGLIGYTTRVEK-----------------------------NIEPSWGTEKVR  277 (420)
Q Consensus       228 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------------------~~~lt~~~~~~~  277 (420)
                      +....+++...++.+... .......++|+++|++....                             ..++......+.
T Consensus       196 ~~~~~~~l~~~l~~lp~~~~~~~~~~~VglItf~~~v~~~~~~~~~~~~~~~v~~d~~~~~~p~~~~~l~~l~e~~~~i~  275 (770)
T 3efo_B          196 VKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIH  275 (770)
T ss_dssp             HHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTSCCCCCSSSSSBCTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99999999999985622230367753799998167189955788867540341158543465564452120899899999


Q ss_pred             HHHHHHHHC---CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-----------
Q ss_conf             999986404---678876538899999986131012334554334776778776662489960686777-----------
Q gi|254781110|r  278 QYVTRDMDS---LILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNN-----------  343 (420)
Q Consensus       278 ~~i~~~~~~---~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~-----------  343 (420)
                      +.++.+...   .....|..+.++..+...|.....+                  .|++++. +|..+.           
T Consensus       276 ~~L~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~~~g------------------Gkii~f~-s~~P~~~gpg~l~~r~~  336 (770)
T 3efo_B          276 NLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCP------------------GKLFIFH-SSLPTAEAPGKLKNRDD  336 (770)
T ss_dssp             HHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCC------------------EEEEEEE-CSCCCSSSTTCCCCCCC
T ss_pred             HHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC------------------CEEEEEE-CCCCCCCCCCCCCCCCC
T ss_conf             9986231220578888743899999999997156999------------------6399996-57998888744446543


Q ss_pred             -------------CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH-HHHCCCCCEEEECC
Q ss_conf             -------------7765348999999997898799999548977899999-86218982798179
Q gi|254781110|r  344 -------------FKSNVNTIKICDKAKENFIKIVTISINASPNGQRLLK-TCVSSPEYHYNVVN  394 (420)
Q Consensus       344 -------------~~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~-~cas~~~~yf~a~~  394 (420)
                                   ......-..++..+.++||.|....+..+.-.-..|. -|..++|..|..++
T Consensus       337 ~~~~~~~~e~~~~~~~~~fY~~La~~~~~~~isvDlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~  401 (770)
T 3efo_B          337 KKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNN  401 (770)
T ss_dssp             CCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTT
T ss_pred             CCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf             22357722343036217999999999998594699999448767879999999864966999689


No 38 
>3ijr_A Oxidoreductase, short chain dehydrogenase/reductase family; structural genomics, infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=31.68  E-value=18  Score=13.64  Aligned_cols=25  Identities=8%  Similarity=-0.032  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             4899999999789879999954897
Q gi|254781110|r  349 NTIKICDKAKENFIKIVTISINASP  373 (420)
Q Consensus       349 ~~~~~c~~~k~~gi~i~tIgf~~~~  373 (420)
                      .+..++..+...||++.+|.-|.=.
T Consensus       206 ltr~lA~Ela~~gIrVN~I~PG~v~  230 (291)
T 3ijr_A          206 FTRSLSQSLVQKGIRVNGVAPGPIW  230 (291)
T ss_dssp             HHHHHHHHHGGGTCEEEEEEECSBC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf             9999999863319089999648898


No 39 
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=27.44  E-value=22  Score=13.18  Aligned_cols=22  Identities=27%  Similarity=0.307  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             7899999999886303885699
Q gi|254781110|r    3 LLSRFRFYFKKGIASEKANFSI   24 (420)
Q Consensus         3 ~~~~~~~~~~~~~~~~~G~vai   24 (420)
                      -+.|||+-++++++.-+-.+-+
T Consensus         2 rfkrfrkkfkklfkklspvipl   23 (27)
T 2ket_A            2 RFKRFRKKFKKLFKKLSPVIPL   23 (27)
T ss_dssp             CHHHHHHHHHHHHHHHSCSCHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCH
T ss_conf             3789999999999863753201


No 40 
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=26.62  E-value=22  Score=13.08  Aligned_cols=23  Identities=9%  Similarity=-0.048  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             89999999978987999995489
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINAS  372 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~~  372 (420)
                      ++.++..+...||++.+|.-|.=
T Consensus       166 tr~lA~El~~~gIrVN~I~PG~i  188 (250)
T 2cfc_A          166 TKSVAVDYAGSGIRCNAVCPGMI  188 (250)
T ss_dssp             HHHHHHHHGGGTEEEEEEEECSB
T ss_pred             HHHHHHHHHHCCEEEEEEEECCC
T ss_conf             99999996240959999610878


No 41 
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B*
Probab=26.14  E-value=23  Score=13.03  Aligned_cols=14  Identities=21%  Similarity=0.385  Sum_probs=4.6

Q ss_pred             HHHHCCCEEEEEEE
Q ss_conf             99978987999995
Q gi|254781110|r  356 KAKENFIKIVTISI  369 (420)
Q Consensus       356 ~~k~~gi~i~tIgf  369 (420)
                      .+++..-.+..|-|
T Consensus       408 ~i~~~~~d~i~vn~  421 (561)
T 3igz_B          408 ALKSGMYNVVRINF  421 (561)
T ss_dssp             HHHHSCCSEEEEEE
T ss_pred             HHHCCCCCEEEECC
T ss_conf             87557988899846


No 42 
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=25.92  E-value=23  Score=13.00  Aligned_cols=37  Identities=22%  Similarity=0.118  Sum_probs=26.9

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf             2489960686777776534899999999789879999
Q gi|254781110|r  331 KFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTI  367 (420)
Q Consensus       331 k~iil~TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tI  367 (420)
                      ..||||-|+.......-..+..+++.+|++|.++.|+
T Consensus       149 g~IvL~Hd~~~~~~~t~~aL~~li~~lk~~Gy~fvtl  185 (216)
T 2c71_A          149 GTIILLHDVQPEPHPTPEALDIIIPTLKSRGYEFVTL  185 (216)
T ss_dssp             TBEEEEESCCSSSCCHHHHHHHHHHHHHHTTCEECCH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEH
T ss_conf             9499977999972069999999999999789999888


No 43 
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reductase; structural genomics, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=25.84  E-value=23  Score=12.99  Aligned_cols=22  Identities=14%  Similarity=0.073  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHCCCEEEEEEECC
Q ss_conf             8999999997898799999548
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINA  371 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~  371 (420)
                      .+.++..+...||++.+|.-|.
T Consensus       172 t~~lA~el~~~gIrVN~V~PG~  193 (255)
T 3icc_A          172 TFTLAKQLGARGITVNAILPGF  193 (255)
T ss_dssp             HHHHHHHHGGGTCEEEEEEECC
T ss_pred             HHHHHHHHHHHCCEEEEEEECC
T ss_conf             9999999746597897871087


No 44 
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=25.38  E-value=9.6  Score=15.47  Aligned_cols=62  Identities=13%  Similarity=0.159  Sum_probs=38.5

Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCC
Q ss_conf             34899999999789879999954897789999986218982798179899999999999874202
Q gi|254781110|r  348 VNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVHR  412 (420)
Q Consensus       348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~~aF~~Ia~~I~~l  412 (420)
                      .....+++.++++||.+..|.+..-+.+...++.|.+ ..|  .-+.-+.+.++|+++.+++.=+
T Consensus       357 ~~~~~~~~~L~~~Gi~v~~i~~Ptvp~g~~rlR~~~~-a~h--T~edId~~v~~l~~v~~~lg~~  418 (427)
T 2w8t_A          357 EQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSIC-AEH--TPAQIQTVLGMFQAAGRAVGVI  418 (427)
T ss_dssp             HHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECC-TTC--CHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEC-CCC--CHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999848945976789988999725999847-669--9999999999999999982967


No 45 
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp}
Probab=24.46  E-value=24  Score=12.83  Aligned_cols=22  Identities=9%  Similarity=0.004  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHCCCEEEEEEECC
Q ss_conf             8999999997898799999548
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINA  371 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~  371 (420)
                      ...++..+...||++..|.-|.
T Consensus       165 t~~lA~el~~~gIrVN~I~PG~  186 (246)
T 3osu_A          165 TKSAARELASRGITVNAVAPGF  186 (246)
T ss_dssp             HHHHHHHHGGGTEEEEEEEECS
T ss_pred             HHHHHHHHHHHCCEEEEECCCC
T ss_conf             9999999606684896663186


No 46 
>3afn_B A1-R, 4-deoxy-L-erythro-5-hexoseulose-uronic acid reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=22.81  E-value=26  Score=12.62  Aligned_cols=22  Identities=9%  Similarity=0.040  Sum_probs=14.8

Q ss_pred             HHHHHHHHHCCCEEEEEEECCC
Q ss_conf             9999999978987999995489
Q gi|254781110|r  351 IKICDKAKENFIKIVTISINAS  372 (420)
Q Consensus       351 ~~~c~~~k~~gi~i~tIgf~~~  372 (420)
                      ..++..+...||+|.+|.-|.=
T Consensus       176 k~lA~e~~~~gIrVN~I~PG~i  197 (258)
T 3afn_B          176 KNWVDFHTKDGVRFNIVSPGTV  197 (258)
T ss_dssp             HHHHHHHGGGTEEEEEEEECSB
T ss_pred             HHHHHHHCCCCEEEEEEECCCC
T ss_conf             9999985525849999962869


No 47 
>2kuq_A Fibroblast growth factor receptor substrate 3, LI residue peptide from ALK tyrosine...; chimera, SNT-2, PTB domain, HALK, structural genomics; NMR {Homo sapiens} PDB: 2yt2_A
Probab=22.50  E-value=27  Score=12.58  Aligned_cols=11  Identities=18%  Similarity=0.163  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHH
Q ss_conf             88999899998
Q gi|254781110|r  229 AALKNALLLFL  239 (420)
Q Consensus       229 ~~~~~a~~~~~  239 (420)
                      +..-+.+...+
T Consensus        95 eqIf~~Iq~~I  105 (153)
T 2kuq_A           95 EEIFNLLQDLM  105 (153)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 48 
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2
Probab=22.27  E-value=27  Score=12.55  Aligned_cols=23  Identities=9%  Similarity=-0.005  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             89999999978987999995489
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINAS  372 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~~  372 (420)
                      ++.++..+...||++.+|.-|.-
T Consensus       183 tr~lA~e~~~~gIrVN~V~PG~i  205 (265)
T 1h5q_A          183 VKGLAAEWASAGIRVNALSPGYV  205 (265)
T ss_dssp             HHHHHHHHGGGTEEEEEEEECSB
T ss_pred             HHHHHHHHCCCCCEEEEEECCCC
T ss_conf             99999996301908999953878


No 49 
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=21.15  E-value=28  Score=12.41  Aligned_cols=11  Identities=9%  Similarity=0.159  Sum_probs=6.7

Q ss_pred             CCEEEEEEECC
Q ss_conf             98799999548
Q gi|254781110|r  361 FIKIVTISINA  371 (420)
Q Consensus       361 gi~i~tIgf~~  371 (420)
                      +|+|..|.-|.
T Consensus       179 ~IrVN~I~PG~  189 (259)
T 3edm_A          179 KIRVNAVCPGM  189 (259)
T ss_dssp             TCEEEEEEECC
T ss_pred             CCEEEEEECCC
T ss_conf             98899984187


Done!