Query gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 420 No_of_seqs 153 out of 724 Neff 9.9 Searched_HMMs 23785 Date Wed Jun 1 00:51:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781110.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2odp_A Complement C2; C3/C5 co 99.7 2.5E-16 1.1E-20 123.4 14.6 194 185-408 4-212 (509) 2 1shu_X Anthrax toxin receptor 99.7 1.7E-15 7E-20 118.1 18.1 175 190-409 6-181 (182) 3 1q0p_A Complement factor B; VO 99.7 1E-15 4.4E-20 119.4 15.7 192 187-412 12-222 (223) 4 1rrk_A Complement factor B; BB 99.7 2.4E-15 1E-19 117.0 15.0 187 191-411 2-207 (497) 5 1v7p_C Integrin alpha-2; snake 99.6 2.8E-14 1.2E-18 110.1 17.5 181 190-412 6-198 (200) 6 3ibs_A Conserved hypothetical 99.6 1.5E-13 6.2E-18 105.4 17.8 172 191-406 12-210 (218) 7 1pt6_A Integrin alpha-1; X-RAY 99.6 5.4E-14 2.3E-18 108.2 14.5 183 190-414 7-201 (213) 8 3hrz_D Complement factor B; se 99.6 1.3E-13 5.5E-18 105.7 16.1 173 227-413 260-451 (741) 9 2b2x_A Integrin alpha-1; compu 99.6 1.2E-13 5.1E-18 105.9 13.5 183 190-414 22-216 (223) 10 1atz_A VON willebrand factor; 99.5 6.3E-13 2.6E-17 101.3 15.3 176 190-410 5-184 (189) 11 1n3y_A Integrin alpha-X; alpha 99.5 2.1E-13 8.8E-18 104.4 12.1 184 187-412 6-196 (198) 12 1mf7_A Integrin alpha M; cell 99.5 1.8E-13 7.7E-18 104.8 10.6 180 190-411 5-191 (194) 13 3gxb_A VON willebrand factor; 99.5 4.5E-12 1.9E-16 95.7 16.9 172 190-410 2-175 (184) 14 1ijb_A VON willebrand factor; 99.5 2.2E-11 9.4E-16 91.2 19.1 182 189-411 12-197 (202) 15 2x5n_A SPRPN10, 26S proteasome 99.4 1.1E-11 4.5E-16 93.2 14.5 150 192-381 4-154 (192) 16 2xgg_A Microneme protein 2; A/ 99.2 5.8E-10 2.5E-14 82.0 12.2 151 189-381 16-170 (178) 17 1mjn_A Integrin alpha-L; rossm 99.1 4.4E-10 1.9E-14 82.7 10.1 171 190-409 2-179 (179) 18 2x31_A Magnesium-chelatase 60 99.0 4.4E-11 1.8E-15 89.3 -0.4 169 190-404 5-185 (189) 19 3k6s_A Integrin alpha-X; cell 98.9 1.7E-09 7E-14 79.0 4.6 166 227-414 147-319 (1095) 20 2iue_A Pactolus I-domain; memb 98.7 1.5E-07 6.1E-12 66.4 11.0 160 190-392 3-193 (212) 21 1jey_B KU80; double-strand DNA 97.9 0.00053 2.2E-08 43.2 13.8 146 192-372 9-169 (565) 22 2nvo_A RO sixty-related protei 97.8 0.00055 2.3E-08 43.1 11.9 137 191-373 363-501 (535) 23 2vdr_B Integrin beta-3; cell a 97.7 0.0005 2.1E-08 43.4 10.9 146 186-370 107-313 (461) 24 1yvr_A RO autoantigen, 60-kDa 97.6 0.0034 1.4E-07 37.9 14.0 134 191-372 369-504 (538) 25 3fcs_B Integrin beta-3; beta p 97.5 0.00093 3.9E-08 41.6 9.3 127 264-410 191-356 (690) 26 3k6s_B Integrin beta-2; cell r 96.0 0.012 5E-07 34.4 5.6 126 263-410 182-346 (687) 27 1jey_A KU70; double-strand DNA 64.1 5.6 0.00023 17.0 13.0 41 330-370 163-206 (609) 28 1m2v_B SEC24, protein transpor 54.9 8 0.00034 16.0 18.2 158 232-410 323-549 (926) 29 1kjn_A MTH0777; hypotethical p 51.8 7.6 0.00032 16.1 2.5 16 359-374 101-116 (157) 30 3eh1_A Protein transport prote 48.5 10 0.00042 15.3 18.1 158 228-410 179-398 (751) 31 1gee_A Glucose 1-dehydrogenase 44.1 12 0.00049 14.9 6.5 23 350-372 169-191 (261) 32 2hq1_A Glucose/ribitol dehydro 42.8 12 0.00052 14.8 7.8 24 350-373 166-189 (247) 33 3gk3_A Acetoacetyl-COA reducta 40.1 13 0.00057 14.5 7.6 23 350-372 186-208 (269) 34 2k21_A Potassium voltage-gated 39.6 14 0.00058 14.5 3.2 34 17-50 46-79 (138) 35 1pcx_A Protein transport prote 37.7 15 0.00062 14.3 18.0 159 231-410 206-433 (810) 36 3is3_A 17BETA-hydroxysteroid d 34.5 16 0.00069 13.9 6.5 24 350-373 178-201 (270) 37 3efo_B SEC24 related gene fami 32.3 18 0.00075 13.7 18.6 148 228-394 196-401 (770) 38 3ijr_A Oxidoreductase, short c 31.7 18 0.00077 13.6 10.4 25 349-373 206-230 (291) 39 2ket_A Cathelicidin-6; antimic 27.4 22 0.0009 13.2 2.5 22 3-24 2-23 (27) 40 2cfc_A 2-(R)-hydroxypropyl-COM 26.6 22 0.00093 13.1 7.2 23 350-372 166-188 (250) 41 3igz_B Cofactor-independent ph 26.1 23 0.00095 13.0 6.4 14 356-369 408-421 (561) 42 2c71_A Glycoside hydrolase, fa 25.9 23 0.00096 13.0 2.7 37 331-367 149-185 (216) 43 3icc_A Putative 3-oxoacyl-(acy 25.8 23 0.00097 13.0 8.1 22 350-371 172-193 (255) 44 2w8t_A SPT, serine palmitoyltr 25.4 9.6 0.0004 15.5 -0.5 62 348-412 357-418 (427) 45 3osu_A 3-oxoacyl-[acyl-carrier 24.5 24 0.001 12.8 7.2 22 350-371 165-186 (246) 46 3afn_B A1-R, 4-deoxy-L-erythro 22.8 26 0.0011 12.6 10.1 22 351-372 176-197 (258) 47 2kuq_A Fibroblast growth facto 22.5 27 0.0011 12.6 1.7 11 229-239 95-105 (153) 48 1h5q_A NADP-dependent mannitol 22.3 27 0.0011 12.6 7.4 23 350-372 183-205 (265) 49 3edm_A Short chain dehydrogena 21.1 28 0.0012 12.4 7.5 11 361-371 179-189 (259) No 1 >2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Probab=99.72 E-value=2.5e-16 Score=123.38 Aligned_cols=194 Identities=16% Similarity=0.207 Sum_probs=133.2 Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC Q ss_conf 34434432012210223242233578766667534676653067889998999985104678765543022320487643 Q gi|254781110|r 185 MGERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE 264 (420) Q Consensus 185 ~~~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (420) +......|+.|++|.|+||. ..+++.+++.+..+++.+... ....|++++.|++... T Consensus 4 ~~~~g~~DivfvlD~SgSm~--------------------~~~~~~~k~~~~~~i~~~~~~---~~~~rv~lv~fs~~~~ 60 (509) T 2odp_A 4 IQRSGHLNLYLLLDASQSVS--------------------ENDFLIFKESASLMVDRIFSF---EINVSVAIITFASEPK 60 (509) T ss_dssp CCSSSEEEEEEEEECSTTSC--------------------HHHHHHHHHHHHHHHHHHHTT---CCCEEEEEEEESSSEE T ss_pred CCCCCCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCEEE T ss_conf 56789865999997869999--------------------899999999999999961448---9974899999888357 Q ss_pred CCCCCCCCH----HHHHHHHHHHH--HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 124457784----88999999864--046788765388999999861310123345543347767787766624899606 Q gi|254781110|r 265 KNIEPSWGT----EKVRQYVTRDM--DSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTD 338 (420) Q Consensus 265 ~~~~lt~~~----~~~~~~i~~~~--~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TD 338 (420) ...+|+... ..+.+.+..+. ....+|+|++..||..++..+........ ......++.+|++||+|| T Consensus 61 ~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~~~~-------~~~~~~~~~~~~iillTD 133 (509) T 2odp_A 61 VLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLG-------METMAWQEIRHAIILLTD 133 (509) T ss_dssp EEECTTSGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHC-------TTSHHHHTEEEEEEEESC T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-------CCCCCCCCCCEEEEEECC T ss_conf 9971788875579999999971734567789977799999999999998764302-------355666788629999948 Q ss_pred CCCCCCCCCCHHH-HHHH-----HHHHCCCEEEEEEECCCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHH Q ss_conf 8677777653489-9999-----9997898799999548977899999862189---8279817989999999999987 Q gi|254781110|r 339 GENNNFKSNVNTI-KICD-----KAKENFIKIVTISINASPNGQRLLKTCVSSP---EYHYNVVNADSLIHVFQNISQL 408 (420) Q Consensus 339 G~~~~~~~~~~~~-~~c~-----~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~---~~yf~a~~~~~L~~aF~~Ia~~ 408 (420) |..|.+....... .+.+ ..|+.||.||+||+|...-..+.|+..|+.+ .|+|.+++.++|.++|++|-.+ T Consensus 134 G~~n~g~~~~~~~~~~~~~~~~~~~~~~~v~i~~igvG~~~~d~~~L~~ias~~~~~~h~f~~~~~~~L~~~~~~i~~~ 212 (509) T 2odp_A 134 GKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDV 212 (509) T ss_dssp SCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEEC T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCC T ss_conf 8756699848999998766666566306965999995886458999999865999971599948888999999740442 No 2 >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Probab=99.71 E-value=1.7e-15 Score=118.06 Aligned_cols=175 Identities=15% Similarity=0.122 Sum_probs=137.0 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420) ..|+.|++|.|+||.. .+...++.+..++..+. .+..|++++.|++......++ T Consensus 6 ~~DivfliD~S~Sm~~---------------------~~~~~k~~~~~~~~~~~-----~~~~rvglv~fs~~~~~~~~~ 59 (182) T 1shu_X 6 AFDLYFVLDKSGSVAN---------------------NWIEIYNFVQQLAERFV-----SPEMRLSFIVFSSQATIILPL 59 (182) T ss_dssp CEEEEEEEECSGGGGG---------------------GHHHHHHHHHHHHHHCC-----CTTEEEEEEEESSSEEEEEEE T ss_pred CEEEEEEEECCCCCCC---------------------CHHHHHHHHHHHHHHHC-----CCCCEEEEEEECCCCEEECCC T ss_conf 7469999938978432---------------------79999999999999735-----899879999960454152464 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH Q ss_conf 77848899999986404678876538899999986131012334554334776778776662489960686777776534 Q gi|254781110|r 270 SWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVN 349 (420) Q Consensus 270 t~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~ 349 (420) +++.....+.+..+....+.|+|++..++..+.+.+.... +...+|++|+||||..+... ... T Consensus 60 ~~~~~~~~~~l~~~~~~~~~g~T~~~~al~~~~~~~~~~~----------------~~~~~~~ivllTDG~~~~~~-~~~ 122 (182) T 1shu_X 60 TGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAG----------------GLKTSSIIIALTDGKLDGLV-PSY 122 (182) T ss_dssp ECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHT----------------GGGSCEEEEEEECCCCCTTH-HHH T ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC----------------CCCCCEEEEEEECCCCCCCC-CHH T ss_conf 3557889998887740679998469999999999987503----------------67885599999728878886-489 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECC-HHHHHHHHHHHHHHH Q ss_conf 899999999789879999954897789999986218982798179-899999999999874 Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVN-ADSLIHVFQNISQLM 409 (420) Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~-~~~L~~aF~~Ia~~I 409 (420) ....++.+|+.||.||+||++. .+. ..|+..|+.|++.|.+.+ .++|.+.++.|.+.| T Consensus 123 ~~~~a~~l~~~gv~v~~Vgig~-~~~-~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~~~ 181 (182) T 1shu_X 123 AEKEAKISRSLGASVYCVGVLD-FEQ-AQLERIADSKEQVFPVKGGFQALKGIINSILAQS 181 (182) T ss_dssp HHHHHHHHHHTTCEEEEEECSS-CCH-HHHHHHSSSGGGEEESSSTTHHHHHHHHHHHHTB T ss_pred HHHHHHHHHHCCCEEEEEEECC-CCH-HHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH T ss_conf 9999999997899999998475-489-9999985899966993499999999999998623 No 3 >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Probab=99.70 E-value=1e-15 Score=119.38 Aligned_cols=192 Identities=16% Similarity=0.181 Sum_probs=139.2 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312 Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420) Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420) .....++.|++|.|+||. ..+++..+.++..+++.+... ....|++++.|++..... T Consensus 12 ~~~~~DivfvlD~SgSm~--------------------~~~~~~~k~~~~~li~~~~~~---~~~~rvgvv~fs~~~~~~ 68 (223) T 1q0p_A 12 PSGSMNIYLVLDGSDSIG--------------------ASNFTGAKKSLVNLIEKVASY---GVKPRYGLVTYATYPKIW 68 (223) T ss_dssp ---CEEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHHHHTT---TCCCEEEEEEESSSEEEE T ss_pred CCCCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCEEEE T ss_conf 989861899994888888--------------------288999999999999973368---877589999975937899 Q ss_pred CCCCCCH----HHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC Q ss_conf 4457784----8899999986404--678876538899999986131012334554334776778776662489960686 Q gi|254781110|r 267 IEPSWGT----EKVRQYVTRDMDS--LILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGE 340 (420) Q Consensus 267 ~~lt~~~----~~~~~~i~~~~~~--~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~ 340 (420) .+++... ......++.+... ..+|+|++..+|..+...+..... ......+...|++||+|||. T Consensus 69 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~----------~~~~~~~~~~~~ivllTDG~ 138 (223) T 1q0p_A 69 VKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD----------VPPEGWNRTRHVIILMTDGL 138 (223) T ss_dssp ECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTS----------SCCTTGGGCEEEEEEEECSC T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC----------CCCCCCCCCCEEEEEECCCC T ss_conf 70786302456789999985454216688897599999999999864011----------46666777742899976887 Q ss_pred CCCCCCCCHHHHHHH----------HHHHCCCEEEEEEECCCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHH Q ss_conf 777776534899999----------9997898799999548977899999862189---827981798999999999998 Q gi|254781110|r 341 NNNFKSNVNTIKICD----------KAKENFIKIVTISINASPNGQRLLKTCVSSP---EYHYNVVNADSLIHVFQNISQ 407 (420) Q Consensus 341 ~~~~~~~~~~~~~c~----------~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~---~~yf~a~~~~~L~~aF~~Ia~ 407 (420) .|.+.........++ .++..|+.+|+||+|.+.+. ..|+.+|+.+ .+||.+++.++|.++|.+|.. T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~igvg~~~~~-~~L~~iAs~~~~~~~~~~~~d~~~L~~~~~~i~~ 217 (223) T 1q0p_A 139 HNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQ-VNINALASKKDNEQHVFKVKDMENLEDVFYQMID 217 (223) T ss_dssp CCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCH-HHHHHHSCCCTTCCCEEETTC------------- T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-HHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH T ss_conf 677898289999998633467999998767965999736875699-9999997498997479990899999999999998 Q ss_pred HHHCC Q ss_conf 74202 Q gi|254781110|r 408 LMVHR 412 (420) Q Consensus 408 ~I~~l 412 (420) +..+| T Consensus 218 e~~s~ 222 (223) T 1q0p_A 218 ESQSL 222 (223) T ss_dssp ----C T ss_pred HHCCC T ss_conf 61478 No 4 >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Probab=99.67 E-value=2.4e-15 Score=117.04 Aligned_cols=187 Identities=17% Similarity=0.187 Sum_probs=133.0 Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124457 Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS 270 (420) Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 270 (420) +|+.|++|.|+||. ..+++..++++..+++.+... .+..|++++.|++......+++ T Consensus 2 lDivfvlD~S~Sm~--------------------~~~~~~~k~~~~~~i~~~~~~---~~~~rv~lv~f~~~~~~~~~l~ 58 (497) T 1rrk_A 2 MNIYLVLDGSDSIG--------------------ASNFTGAKKVLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVS 58 (497) T ss_dssp EEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESSSEEEEECTT T ss_pred CCEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCCC---CCCEEEEEEEECCEEEEEECCC T ss_conf 45899995779998--------------------699999999999999853658---9960999999878178997379 Q ss_pred CC----HHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC Q ss_conf 78----48899999986404--6788765388999999861310123345543347767787766624899606867777 Q gi|254781110|r 271 WG----TEKVRQYVTRDMDS--LILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF 344 (420) Q Consensus 271 ~~----~~~~~~~i~~~~~~--~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~ 344 (420) .. ...+.+.++++... ...|+|++..+|.++...+...... ........+|++||+|||..|.+ T Consensus 59 ~~~~~~~~~~~~~i~~i~~~~~~~~g~T~~~~al~~a~~~~~~~~~~----------~~~~~~~~~~viillTDG~~n~~ 128 (497) T 1rrk_A 59 EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV----------PPEGWNRTRHVIILMTDGLHNMG 128 (497) T ss_dssp SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC----------------CGGGCEEEEEEEECSCCCSS T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC----------CCCCCCCCCEEEEEEECCCCCCC T ss_conf 87756899999999608566886888757999999999998652014----------75555678759999979767778 Q ss_pred CCCCHHHHH----------HHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHC Q ss_conf 765348999----------999997898799999548977899999862189---8279817989999999999987420 Q gi|254781110|r 345 KSNVNTIKI----------CDKAKENFIKIVTISINASPNGQRLLKTCVSSP---EYHYNVVNADSLIHVFQNISQLMVH 411 (420) Q Consensus 345 ~~~~~~~~~----------c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~---~~yf~a~~~~~L~~aF~~Ia~~I~~ 411 (420) ......... ...+|+.||.||+||+|.+.+.. .|+..|+.+ .|||.+++.++|.++|..+.++-.. T Consensus 129 ~~p~~~~~~i~~~~~~~~~~~~~~~~gi~i~~vgiG~~~d~~-~L~~iAs~~~~~~~~f~~~d~~~L~~~~~~~~~~~~~ 207 (497) T 1rrk_A 129 GDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQV-NINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQS 207 (497) T ss_dssp SCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHH-HHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGGG T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHH-HHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCC T ss_conf 987899999998787777776687679079997368867999-9998751789850499949999999987530246602 No 5 >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Probab=99.64 E-value=2.8e-14 Score=110.08 Aligned_cols=181 Identities=19% Similarity=0.199 Sum_probs=135.1 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420) ..|+.|++|.|+||. .++..++.+..+++.+.. .++..|++++.|++......+| T Consensus 6 ~~DivfvlD~S~S~~----------------------~~~~~k~f~~~~i~~~~i---~~~~~rv~vv~fs~~~~~~~~l 60 (200) T 1v7p_C 6 LIDVVVVCDESNSIY----------------------PWDAVKNFLEKFVQGLDI---GPTKTQVGLIQYANNPRVVFNL 60 (200) T ss_dssp CEEEEEEEECCTTCC----------------------CHHHHHHHHHHHHHTSCB---STTSEEEEEEEESSSEEEEECT T ss_pred CEEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCEEEEECC T ss_conf 166999997989886----------------------799999999999997155---8876089999975954674066 Q ss_pred CC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 77--8488999999864046788765388999999861310123345543347767787766624899606867777765 Q gi|254781110|r 270 SW--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420) Q Consensus 270 t~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420) +. +...+...+..+.. ..+++|+...+|.++.+.+..... ...++.+|++|++|||..+.. T Consensus 61 ~~~~~~~~~~~~i~~i~~-~~g~~t~~~~AL~~a~~~~f~~~~-------------~~r~~~~kvivllTDG~~~d~--- 123 (200) T 1v7p_C 61 NTYKTKEEMIVATSQTSQ-YGGDLTNTFGAIQYARKYAYSAAS-------------GGRRSATKVMVVVTDGESHDG--- 123 (200) T ss_dssp TTCSSHHHHHHHHHHCCC-CCCSCCCHHHHHHHHHHHTTSGGG-------------TCCTTSEEEEEEEESSCCSCG--- T ss_pred CCHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCCC-------------CCCCCCCEEEEEEECCCCCCC--- T ss_conf 421158999999876306-799964289999999997337355-------------888888555999827988886--- Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCC Q ss_conf 348999999997898799999548977--------899999862189--82798179899999999999874202 Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPN--------GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHR 412 (420) Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~--------~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~l 412 (420) ......++.+|+.||+||+||++...+ ....|+..|+.| .|+|.+++.++|.+.++.|.+.|-++ T Consensus 124 ~~~~~~~~~~~~~gi~i~~Igvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~d~~~L~~~~~~l~~~ic~i 198 (200) T 1v7p_C 124 SMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFSI 198 (200) T ss_dssp GGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHTC T ss_pred CCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC T ss_conf 113999998764890999999777445565443125999999866998613999389999999999999772056 No 6 >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for structural genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Probab=99.60 E-value=1.5e-13 Score=105.37 Aligned_cols=172 Identities=16% Similarity=0.202 Sum_probs=130.6 Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124457 Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS 270 (420) Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 270 (420) .++.+++|+|+||.... ...+|++.++.++..+++.+. ..+++++.|++......+++ T Consensus 12 ~divlvvD~SgSM~~~D---------------~~~~R~~~ak~~~~~~l~~~~-------~~rvglv~F~~~~~~~~~~t 69 (218) T 3ibs_A 12 VEVIIALDISNSMLAQD---------------VQPSRLEKAKRLISRLVDELD-------NDKVGMIVFAGDAFTQLPIT 69 (218) T ss_dssp CEEEEEEECSGGGGCCS---------------SSSCHHHHHHHHHHHHHHTCS-------SCEEEEEEESSSEEEEEEEE T ss_pred CEEEEEEECCCCCCCCC---------------CCCCHHHHHHHHHHHHHHHCC-------CCEEEEEEECCCCCCCCCCC T ss_conf 58999997985778877---------------784899999999999995099-------97699999768442011243 Q ss_pred CCHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH Q ss_conf 784889999998640-4678876538899999986131012334554334776778776662489960686777776534 Q gi|254781110|r 271 WGTEKVRQYVTRDMD-SLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVN 349 (420) Q Consensus 271 ~~~~~~~~~i~~~~~-~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~ 349 (420) .+.......+..+.. ..+.|+|++..++.++...|.+ .+...|++||+|||+++... T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~gT~~~~al~~a~~~l~~------------------~~~~~~~iillSDG~~~~~~---- 127 (218) T 3ibs_A 70 SDYISAKMFLESISPSLISKQGTAIGEAINLATRSFTP------------------QEGVGRAIIVITDGENHEGG---- 127 (218) T ss_dssp SCHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCS------------------CSSCCEEEEEEECCTTCCSC---- T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH------------------HCCCCCEEEEECCCCCCCCC---- T ss_conf 06778888887522145668996378999999987412------------------02677679996589988761---- Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCC------------------------HHHHHHHHHC-CCCCEEEECCHHHHHHHHHH Q ss_conf 8999999997898799999548977------------------------8999998621-89827981798999999999 Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINASPN------------------------GQRLLKTCVS-SPEYHYNVVNADSLIHVFQN 404 (420) Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~~~~------------------------~~~~l~~cas-~~~~yf~a~~~~~L~~aF~~ 404 (420) .......++..++.+++|+++.+.. ...+|+..|. ++|.||.+.+.+++.++|.. T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~iA~~tgG~y~~~~~~~~~~~~i~~ 207 (218) T 3ibs_A 128 AVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQ 207 (218) T ss_dssp HHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHH T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHH T ss_conf 38999999876987999986268786211226775221467762433269999999999649189995287999999999 Q ss_pred -HH Q ss_conf -99 Q gi|254781110|r 405 -IS 406 (420) Q Consensus 405 -Ia 406 (420) |. T Consensus 208 ~I~ 210 (218) T 3ibs_A 208 EIS 210 (218) T ss_dssp HHH T ss_pred HHH T ss_conf 997 No 7 >1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Probab=99.59 E-value=5.4e-14 Score=108.25 Aligned_cols=183 Identities=19% Similarity=0.219 Sum_probs=133.6 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420) ..|+.|++|.|+||. .++..+..+..+++.+. ..+...|++++.|++......+| T Consensus 7 ~~DivfvlD~S~S~~----------------------~f~~~k~f~~~~i~~~~---~~~~~~rv~vv~y~~~~~~~~~l 61 (213) T 1pt6_A 7 QLDIVIVLDGSNSIY----------------------PWDSVTAFLNDLLKRMD---IGPKQTQVGIVQYGENVTHEFNL 61 (213) T ss_dssp CEEEEEEEECCTTCC----------------------CHHHHHHHHHHHHTTSC---BSTTSBEEEEEEESSSEEEEECT T ss_pred CEEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHHC---CCCCCCEEEEEEEEEEEEEEECC T ss_conf 448999997988887----------------------88999999999999724---48877378899974236899776 Q ss_pred CC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 77--8488999999864046788765388999999861310123345543347767787766624899606867777765 Q gi|254781110|r 270 SW--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420) Q Consensus 270 t~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420) +. +...+...++++.. ..+++|+...++.++...+.....+ ..++.+|++|++|||..+. + T Consensus 62 ~~~~~~~~~~~~i~~~~~-~~g~~t~~~~al~~a~~~~~~~~~g-------------~R~~~~k~villTDG~~~d---~ 124 (213) T 1pt6_A 62 NKYSSTEEVLVAAKKIVQ-RGGRQTMTALGTDTARKEAFTEARG-------------ARRGVKKVMVIVTDGESHD---N 124 (213) T ss_dssp TTCSSHHHHHHHHHTCCC-CCCSSCCHHHHHHHHHHTTTSGGGT-------------CCTTCEEEEEEEESSCCSC---S T ss_pred CCCCCHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHCCCCCC-------------CCCCCEEEEEEEECCCCCC---C T ss_conf 556779999999877775-0784100212343444320132247-------------8778668999984698788---4 Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCCEE Q ss_conf 348999999997898799999548977--------899999862189--8279817989999999999987420255 Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPN--------GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHRKY 414 (420) Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~--------~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~lr~ 414 (420) .......+.+|+.||+||+||+|...+ ....|+..|+.| .|+|.+++.++|.+.++.|.+.|-.+.- T Consensus 125 ~~~~~~~~~lk~~gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~~~L~~i~~~l~~~ic~~~~ 201 (213) T 1pt6_A 125 HRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFALEA 201 (213) T ss_dssp HHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC--- T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC T ss_conf 15999999999889999999974765545433324699999986699854089808999999999999999724678 No 8 >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* Probab=99.58 E-value=1.3e-13 Score=105.73 Aligned_cols=173 Identities=15% Similarity=0.189 Sum_probs=120.8 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCH----HHHHHHHHHHHHC--CCCCCCCHHHHHHH Q ss_conf 67889998999985104678765543022320487643124457784----8899999986404--67887653889999 Q gi|254781110|r 227 KMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSWGT----EKVRQYVTRDMDS--LILKPTDSTPAMKQ 300 (420) Q Consensus 227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~----~~~~~~i~~~~~~--~~~g~T~~~~gl~~ 300 (420) .++..+..+..+++.+... .+..|++++.|++.......++... ..+.+.++.+... ...|+|+...||.+ T Consensus 260 ~f~~~k~f~~~lv~~~~~~---~~~~rv~vi~ys~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~ggT~t~~Al~~ 336 (741) T 3hrz_D 260 DFTGAKKCLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQA 336 (741) T ss_dssp HHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCCGGGGSSSCCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH T ss_conf 8999999999999863468---8874699999647715888516666789999999997177666778887589999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHH-H---------HHHHHHCCCEEEEEEEC Q ss_conf 9986131012334554334776778776662489960686777776534899-9---------99999789879999954 Q gi|254781110|r 301 AYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIK-I---------CDKAKENFIKIVTISIN 370 (420) Q Consensus 301 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~~~-~---------c~~~k~~gi~i~tIgf~ 370 (420) +...+..... +.....++.+|++|++|||..+.+........ + .+.+|.+||.||+||+| T Consensus 337 ~~~~~~~~~~----------~~~~~~~~~~~vlillTDG~s~~g~~p~~~~~~~~~~~~~~~~~~~~~~~gi~i~~igvg 406 (741) T 3hrz_D 337 VYSMMSWPDD----------VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVG 406 (741) T ss_dssp HHHHHCCC------------CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECS T ss_pred HHHHHHHHHC----------CCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC T ss_conf 9986421101----------575556789859999899865578883244443221222346677788789399999867 Q ss_pred CCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHCCE Q ss_conf 8977899999862189---827981798999999999998742025 Q gi|254781110|r 371 ASPNGQRLLKTCVSSP---EYHYNVVNADSLIHVFQNISQLMVHRK 413 (420) Q Consensus 371 ~~~~~~~~l~~cas~~---~~yf~a~~~~~L~~aF~~Ia~~I~~lr 413 (420) .+.+.. .|+..|+.+ .|+|.+.+-++|.++|..|.+...+.+ T Consensus 407 ~~~~~~-~L~~iAs~~~~~~~v~~~~d~~~L~~~~~~~~~~~~~~~ 451 (741) T 3hrz_D 407 PLVNQV-NINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLS 451 (741) T ss_dssp SSCCHH-HHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCTT T ss_pred CCCCHH-HHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCC T ss_conf 758999-999997088886239996899998888744300232344 No 9 >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Probab=99.55 E-value=1.2e-13 Score=105.95 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=133.8 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420) ..|+.|++|.|++|. .++..+..+..+++.+. ..++..|++++.|++......+| T Consensus 22 ~~DivfvlD~S~sv~----------------------~~~~~k~fv~~li~~~~---i~~~~~rv~lv~fs~~~~~~~~l 76 (223) T 2b2x_A 22 QLDIVIVLDGSNSIY----------------------PWESVIAFLNDLLKRMD---IGPKQTQVGIVQYGENVTHEFNL 76 (223) T ss_dssp CEEEEEEEECSTTCC----------------------CHHHHHHHHHHHHTTSC---CSTTSCCEEEEEESSSEEEEECT T ss_pred CEEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHCC---CCCCCCEEEEEEEECCEEEECCC T ss_conf 656999997988743----------------------69999999999999715---58886089899860426786054 Q ss_pred CCCH--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 7784--88999999864046788765388999999861310123345543347767787766624899606867777765 Q gi|254781110|r 270 SWGT--EKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420) Q Consensus 270 t~~~--~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420) +... ..+...++.+.. ..+++|+...+|.++.+.+.....+ .+++.+|++|++|||..+. + T Consensus 77 ~~~~~~~~~~~~i~~i~~-~~~~~t~~~~aL~~~~~~~~~~~~g-------------~R~~~~kvlillTDG~~~d---~ 139 (223) T 2b2x_A 77 NKYSSTEEVLVAANKIVQ-RGGRQTMTALGIDTARKEAFTEARG-------------ARRGVKKVMVIVTDGESHD---N 139 (223) T ss_dssp TTCCSHHHHHHHHTTCCC-CCCSSCCHHHHHHHHHHTTSSGGGT-------------CCTTSEEEEEEEESSCCTT---G T ss_pred CCCCCHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCCC-------------CCCCCCEEEEEEECCCCCC---C T ss_conf 555768999999874312-4773322177788888875033358-------------8878725799982698788---3 Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCCHH--------HHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCCEE Q ss_conf 34899999999789879999954897789--------9999862189--8279817989999999999987420255 Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPNGQ--------RLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHRKY 414 (420) Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~~~--------~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~lr~ 414 (420) .........+|+.||+||+||+|.+.+.. ..|+..||.| .|+|.+++.++|.++++.|.+.|-.+.. T Consensus 140 ~~~~~~a~~lk~~gi~v~~Igvg~~~~~~~~~~~~~~~eL~~IAs~p~~~~~f~~~d~~~L~~i~~~l~~~ic~~e~ 216 (223) T 2b2x_A 140 YRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFALEA 216 (223) T ss_dssp GGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC---- T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCC T ss_conf 12999999998759989999984666644324423699999986699855189818999999999999988643103 No 10 >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 2adf_A 1fe8_A 1ao3_A Probab=99.52 E-value=6.3e-13 Score=101.29 Aligned_cols=176 Identities=13% Similarity=0.131 Sum_probs=128.0 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420) ..|+.|++|.|++|. ...++..+..+..+++.+.. .++..|++++.|++......++ T Consensus 5 ~~DivfllD~S~s~~--------------------~~~~~~~k~fv~~~i~~~~i---~~~~~rv~vv~y~~~~~~~~~l 61 (189) T 1atz_A 5 PLDVILLLDGSSSFP--------------------ASYFDEMKSFAKAFISKANI---GPRLTQVSVLQYGSITTIDVPW 61 (189) T ss_dssp CEEEEEEEECSSSSC--------------------HHHHHHHHHHHHHHHHHSCB---STTSEEEEEEEESSSEEEEECT T ss_pred CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEEEEEEEEEEEEE T ss_conf 578999994879988--------------------68999999999999997075---8887489999975013899985 Q ss_pred CC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 77--8488999999864046788765388999999861310123345543347767787766624899606867777765 Q gi|254781110|r 270 SW--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420) Q Consensus 270 t~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420) .. +...+.+.++.+. ..+|+|++..+|.++.+.+.....+ .+++.+|++|++|||..+. T Consensus 62 ~~~~~~~~~~~~i~~l~--~~gg~t~~~~al~~a~~~~~~~~~g-------------~R~~a~k~vvlltdg~~~~---- 122 (189) T 1atz_A 62 NVVPEKAHLLSLVDVMQ--REGGPSQIGDALGFAVRYLTSEMHG-------------ARPGASKAVVILVTDVSVD---- 122 (189) T ss_dssp TCCCCHHHHHHHHHTCC--CCCCCCCHHHHHHHHHHHHHSCCTT-------------CCTTSEEEEEEEECSCCSS---- T ss_pred ECCCCHHHHHHHHHHHH--HCCCCCCCCHHHHHHHHHHHHHHCC-------------CCCCCEEEEEEEECCCCCC---- T ss_conf 23675899999999887--4377876325789999997401027-------------9998805899992599865---- Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHH Q ss_conf 348999999997898799999548977899999862189--827981798999999999998742 Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMV 410 (420) Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~ 410 (420) .....++.+|..||+||+||+|.+.+... |+..|+.+ ++.|.+.+.++|. .+..|.++|. T Consensus 123 -~~~~~~~~lk~~~i~v~~igig~~~~~~~-l~~ia~~~~~~~~~~~~~~~~l~-~l~~~~~~~~ 184 (189) T 1atz_A 123 -SVDAAADAARSNRVTVFPIGIGDRYDAAQ-LRILAGPAGDSNVVKLQRIEDLP-TMVTLGNSFL 184 (189) T ss_dssp -CCHHHHHHHHHTTEEEEEEEESSSSCHHH-HHHHTGGGGGGGCEEESSTTHHH-HHHHSCSHHH T ss_pred -CHHHHHHHHHHCCCEEEEEEECCCCCHHH-HHHHHCCCCCCCEEEECCHHHHH-HHHHHHHHHH T ss_conf -18999999998899999999588699999-99985788877589946876688-8999999998 No 11 >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Probab=99.51 E-value=2.1e-13 Score=104.41 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=131.3 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312 Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420) Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420) .+...|+.|++|.|+||.. ..+...+..+..+++.+. ....|++++.|++..... T Consensus 6 ~~~~~DivfvlD~S~Sm~~--------------------~~~~~~k~~i~~li~~l~-----~~~~rv~vv~f~~~~~~~ 60 (198) T 1n3y_A 6 SRQEQDIVFLIDGSGSISS--------------------RNFATMMNFVRAVISQFQ-----RPSTQFSLMQFSNKFQTH 60 (198) T ss_dssp --CCEEEEEEEECCTTSCH--------------------HHHHHHHHHHHHHHTTSC-----TTTEEEEEEEESSSEEEE T ss_pred CCCCCCEEEEEECCCCCCH--------------------HHHHHHHHHHHHHHHHHC-----CCCCEEEEEEEECCEEEE T ss_conf 6888648999968799887--------------------999999999999999708-----998589999983432341 Q ss_pred CCCCCCHH--HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC Q ss_conf 44577848--8999999864046788765388999999861310123345543347767787766624899606867777 Q gi|254781110|r 267 IEPSWGTE--KVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF 344 (420) Q Consensus 267 ~~lt~~~~--~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~ 344 (420) .+|+...+ .+...++.+ .+.+|+|+...++.++...+..... ...+..+|++||+|||..+.. T Consensus 61 ~~l~~~~~~~~~~~~i~~~--~~~~~~t~~~~al~~a~~~~~~~~~-------------~~r~~~~kvivlltDG~~~~~ 125 (198) T 1n3y_A 61 FTFEEFRRSSNPLSLLASV--HQLQGFTYTATAIQNVVHRLFHASY-------------GARRDAAKILIVITDGKKEGD 125 (198) T ss_dssp ECHHHHHHCSSGGGGGTTC--CCCCSCBCHHHHHHHHHTTTTSGGG-------------TCCTTSEEEEEEEESSCCBSC T ss_pred CCCCCCCCHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHC-------------CCCCCCCCEEEEEECCCCCCC T ss_conf 2666643389999988765--4036987388999999999842320-------------577876425999935898887 Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECCCC---CHHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCC Q ss_conf 76534899999999789879999954897---7899999862189--82798179899999999999874202 Q gi|254781110|r 345 KSNVNTIKICDKAKENFIKIVTISINASP---NGQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHR 412 (420) Q Consensus 345 ~~~~~~~~~c~~~k~~gi~i~tIgf~~~~---~~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~l 412 (420) . ......++.+|..||+||+||++... .....|+.+|+.| .++|.+++.++|.+.++.|.+.|--+ T Consensus 126 ~--~~~~~~~~~~~~~gv~i~~Ig~g~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~i~~~l~~~ic~~ 196 (198) T 1n3y_A 126 S--LDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAI 196 (198) T ss_dssp S--SCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHTC T ss_pred C--CCHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCC T ss_conf 2--0599999999978988999997876677534999999866998651999299999999999999873167 No 12 >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1 Probab=99.49 E-value=1.8e-13 Score=104.76 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=129.3 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420) ..|+.|++|.|++|. ...+...+..+..++..+. ....|++++.|++......+| T Consensus 5 ~~DivfvlD~S~s~~--------------------~~~f~~~k~~i~~~i~~l~-----~~~~rvgvv~f~~~~~~~~~l 59 (194) T 1mf7_A 5 DSDIAFLIDGSGSII--------------------PHDFRRMKEFVSTVMEQLK-----KSKTLFSLMQYSEEFRIHFTF 59 (194) T ss_dssp CEEEEEEEECCTTSC--------------------HHHHHHHHHHHHHHHHHHC-----CTTEEEEEEEESSSEEEEECH T ss_pred CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCC-----CCCCEEEEEEEEEEEEEEECC T ss_conf 717999995989988--------------------7999999999999999719-----888089999965403775114 Q ss_pred CCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 778--488999999864046788765388999999861310123345543347767787766624899606867777765 Q gi|254781110|r 270 SWG--TEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420) Q Consensus 270 t~~--~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420) +.. ...+.+.++.+. ..+|+|+...++.++.+.+..... ...+..+|++|++|||..+.... T Consensus 60 ~~~~~~~~~~~~i~~l~--~~~g~t~~~~al~~a~~~~~~~~~-------------~~~~~~~kvvvl~tDG~~~~~~~- 123 (194) T 1mf7_A 60 KEFQNNPNPRSLVKPIT--QLLGRTHTATGIRKVVRELFNITN-------------GARKNAFKILVVITDGEKFGDPL- 123 (194) T ss_dssp HHHHHSCCHHHHHTTCC--CCCSCBCHHHHHHHHHHTTTSGGG-------------TCCTTSEEEEEEEESSCCBSCSS- T ss_pred CCCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHC-------------CCCCCCCEEEEEEECCCCCCCHH- T ss_conf 66366899998764134--236986699999999998741432-------------67677664999994788789804- Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHC Q ss_conf 348999999997898799999548977---899999862189--8279817989999999999987420 Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPN---GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVH 411 (420) Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~---~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~ 411 (420) .+......+|..||+||+||++.... ....|+.+|+.| .++|.+++.++|.+.++.|.+.|-. T Consensus 124 -~~~~~~~~l~~~gv~v~~Vgi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~i~~ 191 (194) T 1mf7_A 124 -GYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC 191 (194) T ss_dssp -CGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT T ss_pred -HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC T ss_conf -49999999997799999999788766634699999986699866089949999999999999876414 No 13 >3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens} Probab=99.48 E-value=4.5e-12 Score=95.69 Aligned_cols=172 Identities=12% Similarity=0.058 Sum_probs=124.3 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420) +.|+.|++|.|+|+. ...++..++.+..+++.+.- .+...|++++.|++......+| T Consensus 2 vlDivfllD~S~Sv~--------------------~~~f~~~k~fi~~~i~~l~i---~~~~~rvgvv~fs~~~~~~~~l 58 (184) T 3gxb_A 2 VLDVAFVLEGSDKIG--------------------EADFNRSKEFMEEVIQRMDV---GQDSIHVTVLQYSYMVTVEYPF 58 (184) T ss_dssp CEEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHTSCB---CTTSEEEEEEEESSSEEEEECT T ss_pred CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEEECCCEEEEEEC T ss_conf 168999997989989--------------------79999999999999996365---9873499998854717899846 Q ss_pred CC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 77--8488999999864046788765388999999861310123345543347767787766624899606867777765 Q gi|254781110|r 270 SW--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420) Q Consensus 270 t~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420) +. +...+...++.+.. ..+++|+.+.+|.++.+.+..... ..+++.+|++|++|||..+..-. T Consensus 59 ~~~~~~~~~~~~i~~i~~-~~g~~t~~~~AL~~~~~~~f~~~~-------------~~R~~~~kvivllTdG~s~d~~~- 123 (184) T 3gxb_A 59 SEAQSKGDILQRVREIRY-QGGNRTNTGLALRYLSDHSFLVSQ-------------GDREQAPNLVYMVTGNPASDEIK- 123 (184) T ss_dssp TSCCCHHHHHHHHHTCCC-CCCSCCCHHHHHHHHHHTGGGSCC-------------GGGGGSCEEEEEEECSCCSSCCC- T ss_pred CCCCCHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCC-------------CCCCCCCEEEEEECCCCCCHHHH- T ss_conf 876777999998630011-377654179999999998526344-------------89999966999965999706899- Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHH Q ss_conf 348999999997898799999548977899999862189827981798999999999998742 Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMV 410 (420) Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~~aF~~Ia~~I~ 410 (420) .+.+||+||+||+|.+.+.. .|+..|+ ++++|.+++.++|.+.++.|.+++- T Consensus 124 ---------~~~~gi~i~~vgvG~~~~~~-~L~~ia~-~~~~~~~~~~~~L~~~~~~l~~~~c 175 (184) T 3gxb_A 124 ---------RLPGDIQVVPIGVGPNANVQ-ELERIGW-PNAPILIQDFETLPREAPDLVLQRC 175 (184) T ss_dssp ---------CCCTTEEEEEEEESTTSCHH-HHHHHHT-TSCCEEESCTTTHHHHHHHHHHHHH T ss_pred ---------HHHCCCEEEEEECCCCCCHH-HHHHHCC-CCCEEEECCHHHHHHHHHHHHHHHC T ss_conf ---------98489989999846747999-9998739-9977994899999999999997546 No 14 >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Probab=99.46 E-value=2.2e-11 Score=91.20 Aligned_cols=182 Identities=10% Similarity=0.142 Sum_probs=133.7 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC Q ss_conf 44320122102232422335787666675346766530678899989999851046787655430223204876431244 Q gi|254781110|r 189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIE 268 (420) Q Consensus 189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (420) ...|+.|++|.|+||. ..+++.++..+..+++.+... ....++++..|++......+ T Consensus 12 ~~~DlvfvlD~SgSm~--------------------~~~~~~~k~~~~~li~~l~~~---~~~~~v~~~~~~~~~~~~~~ 68 (202) T 1ijb_A 12 RLLDLVFLLDGSSRLS--------------------EAEFEVLKAFVVDMMERLRVS---QKWVRVAVVEYHDGSHAYIG 68 (202) T ss_dssp SCEEEEEEEECBTTSC--------------------HHHHHHHHHHHHHHHHTBCBS---TTSEEEEEEEESSSEEEEEC T ss_pred CCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEEEE T ss_conf 8734899996889988--------------------589999999999999866678---88736888774263268860 Q ss_pred CCCCH--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC Q ss_conf 57784--8899999986404678876538899999986131012334554334776778776662489960686777776 Q gi|254781110|r 269 PSWGT--EKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKS 346 (420) Q Consensus 269 lt~~~--~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~ 346 (420) +.... ......+..+.. ..+++++...++.+....+.... ..+...|.+++++||..+.... T Consensus 69 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~ 132 (202) T 1ijb_A 69 LKDRKRPSELRRIASQVKY-AGSQVASTSEVLKYTLFQIFSKI---------------DRPEASRIALLLMASQEPQRMS 132 (202) T ss_dssp TTCCCCHHHHHHHHHTCCC-CCBSCCCHHHHHHHHHHHTSSSC---------------SCTTSEEEEEEEECCCCCGGGC T ss_pred CCCCCCHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHC---------------CCCCCCEEEEEEEECCCCCCCC T ss_conf 6753149999999975540-47752049999999997554420---------------5776521358999536898632 Q ss_pred CCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH--CCCCCEEEECCHHHHHHHHHHHHHHHHC Q ss_conf 5348999999997898799999548977899999862--1898279817989999999999987420 Q gi|254781110|r 347 NVNTIKICDKAKENFIKIVTISINASPNGQRLLKTCV--SSPEYHYNVVNADSLIHVFQNISQLMVH 411 (420) Q Consensus 347 ~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~ca--s~~~~yf~a~~~~~L~~aF~~Ia~~I~~ 411 (420) ......++.+|+.||+||+||+|.+.+.+ .|+.+| ++++++|.+++.++|.++++.|.+.|=. T Consensus 133 -~~~~~~a~~l~~~gi~i~~igiG~~~~~~-~l~~ia~~~~~~~~~~~~~~~~l~~~~~~i~~~iC~ 197 (202) T 1ijb_A 133 -RNFVRYVQGLKKKKVIVIPVGIGPHANLK-QIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCD 197 (202) T ss_dssp -TTHHHHHHHHHHTTEEEEEEEESTTSCHH-HHHHHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHH T ss_pred -HHHHHHHHHHHHCCCEEEEEEECCCCCHH-HHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCC T ss_conf -44999999998679889999967846999-999997379976189948999999999999998628 No 15 >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Probab=99.41 E-value=1.1e-11 Score=93.25 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=109.8 Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC-CCCCCC Q ss_conf 2012210223242233578766667534676653067889998999985104678765543022320487643-124457 Q gi|254781110|r 192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE-KNIEPS 270 (420) Q Consensus 192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt 270 (420) -+++++|.|+||... +..++|++.+++++..+++.+....+ ..++++..|.+... ...+++ T Consensus 4 a~viviD~S~SM~~~---------------D~~p~Rl~~ak~a~~~li~~~~~~~~---~~~vg~v~~~~~~~~~~~~~~ 65 (192) T 2x5n_A 4 ATMILIDNSEWMING---------------DYIPTRFEAQKDTVHMIFNQKINDNP---ENMCGLMTIGDNSPQVLSTLT 65 (192) T ss_dssp EEEEEECCSGGGGCT---------------TSSSCHHHHHHHHHHHHHHHHHHHCT---TCEEEEEECCTTSCCEEEEEE T ss_pred EEEEEEECCHHHCCC---------------CCCCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEEECCCCCCCCCCCC T ss_conf 999999898554378---------------98978999999999999998764597---774999860576430147884 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHH Q ss_conf 78488999999864046788765388999999861310123345543347767787766624899606867777765348 Q gi|254781110|r 271 WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT 350 (420) Q Consensus 271 ~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~ 350 (420) .+.......++. ..++|+|+...|+..|+..|... ......+.+++++||..+... ... T Consensus 66 ~~~~~~~~~i~~---l~~~G~T~l~~al~~A~~~l~~~----------------~~~~~~~~iil~tdg~~~~~~--~~~ 124 (192) T 2x5n_A 66 RDYGKFLSAMHD---LPVRGNAKFGDGIQIAQLALKHR----------------ENKIQRQRIVAFVGSPIVEDE--KNL 124 (192) T ss_dssp SCHHHHHHHHTT---CCCCSCCCHHHHHHHHHHHHHTC----------------SCTTSEEEEEEEECSCCSSCH--HHH T ss_pred HHHHHHHHHHCC---CCCCCCCCCCHHHHHHHHHHHHH----------------HHCCCCEEEEEEECCCCCCCH--HHH T ss_conf 089999987402---34468765227999999999862----------------110465069999688975306--789 Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCHHHHHHH Q ss_conf 9999999978987999995489778999998 Q gi|254781110|r 351 IKICDKAKENFIKIVTISINASPNGQRLLKT 381 (420) Q Consensus 351 ~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~ 381 (420) ...++.+|+.||+||+||||.+.+... |+. T Consensus 125 ~~~a~~~~~~~i~i~~Ig~G~~~~~~~-l~~ 154 (192) T 2x5n_A 125 IRLAKRMKKNNVAIDIIHIGELQNESA-LQH 154 (192) T ss_dssp HHHHHHHHHTTEEEEEEEESCC---CH-HHH T ss_pred HHHHHHHCCCCCEEEEEEEECCCCHHH-HHH T ss_conf 999998513575079999717678799-999 No 16 >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Probab=99.16 E-value=5.8e-10 Score=81.96 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=105.3 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC Q ss_conf 44320122102232422335787666675346766530678899989999851046787655430223204876431244 Q gi|254781110|r 189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIE 268 (420) Q Consensus 189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (420) ...|+.|++|.|+||. ...++..++.+..+++.+... .+..+++...|+.......+ T Consensus 16 ~~lDivfvlD~S~Sm~--------------------~~~~~~~k~~v~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~~ 72 (178) T 2xgg_A 16 NQLDICFLIDSSGSIG--------------------IQNFRLVKQFLHTFLMVLPIG---PEEVNNAVVTYSTDVHLQWD 72 (178) T ss_dssp TCEEEEEEEECCTTTC--------------------HHHHHHHHHHHHHHHHHSCBS---TTSEEEEEEEESSSEEEEEC T ss_pred CCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEECCCCEEEEEE T ss_conf 9876999995889988--------------------489999999999999985035---76139998740443036640 Q ss_pred CCCCHH----HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC Q ss_conf 577848----8999999864046788765388999999861310123345543347767787766624899606867777 Q gi|254781110|r 269 PSWGTE----KVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF 344 (420) Q Consensus 269 lt~~~~----~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~ 344 (420) +..... .....+..+ ....++++...++.++...+..... ...++.+|++|++|||+.+.. T Consensus 73 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~vviliTDG~~~~~ 137 (178) T 2xgg_A 73 LQSPNAVDKQLAAHAVLDM--PYKKGSTNTSDGLKACKQILFTGSR-------------PGREHVPKLVIGMTDGESDSD 137 (178) T ss_dssp TTSGGGSCHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHHHHCCC-------------TTCTTSCEEEEEEESSCCCHH T ss_pred CCCCCCHHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHCC-------------CCCCCCCEEEEEEECCCCCCC T ss_conf 2443104299999999862--3023655078999999998753303-------------786523013699843887887 Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHH Q ss_conf 7653489999999978987999995489778999998 Q gi|254781110|r 345 KSNVNTIKICDKAKENFIKIVTISINASPNGQRLLKT 381 (420) Q Consensus 345 ~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~ 381 (420) ......++.+|+.||+||+||+|...+ .+++.. T Consensus 138 ---~~~~~~a~~lk~~gi~I~~iGiG~~~~-~ell~~ 170 (178) T 2xgg_A 138 ---FRTVRAAKEIRELGGIVTVLAVGHYVA-AALVPR 170 (178) T ss_dssp ---HHHSHHHHHHHHTTCEEEEEECC----------- T ss_pred ---CCHHHHHHHHHHCCCEEEEEEECCCCH-HHCCCC T ss_conf ---379999999997899899999787524-425666 No 17 >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Probab=99.12 E-value=4.4e-10 Score=82.75 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=119.5 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420) ..|+.|++|.|+||. ..+++..+..+..+++.+.. ...++++..|+.......++ T Consensus 2 ~~DivfllD~S~Sm~--------------------~~~f~~~k~~~~~~i~~l~~-----~~~~~~v~~~~~~~~~~~~~ 56 (179) T 1mjn_A 2 NVDLVFLFDGSMSLQ--------------------PDEFQKILDFMKDVMKKCSN-----TSYQFAAVQFSTSYKTEFDF 56 (179) T ss_dssp CEEEEEEEECBTTCC--------------------HHHHHHHHHHHHHHHHHTTT-----SSEEEEEEEESSSEEEEECH T ss_pred CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEEEECCEECCCC T ss_conf 769999996889998--------------------79999999999999997375-----77669999986021111352 Q ss_pred CCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 778--488999999864046788765388999999861310123345543347767787766624899606867777765 Q gi|254781110|r 270 SWG--TEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420) Q Consensus 270 t~~--~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420) ... .......+..+ ....|+|+...++.++...+...... ..+..+|++|++|||+.+..... T Consensus 57 ~~~~~~~~~~~~i~~~--~~~~g~~~~~~al~~a~~~~~~~~~~-------------~r~~~~k~ivllTDG~~~~~~~~ 121 (179) T 1mjn_A 57 SDYVKRKDPDALLKHV--KHMLLLTNTFGAINYVATEVFREELG-------------ARPDATKVLIIITDGEATDSGNI 121 (179) T ss_dssp HHHHHHCCHHHHHTTC--CCCCBCCCHHHHHHHHHHHTSSGGGT-------------CCTTSEEEEEEEESSCCSSCSCC T ss_pred CCCCCHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHC-------------CCCCCCEEEEEECCCCCCCCHHH T ss_conf 1204699999987512--55789832788999999998545306-------------89987148999807998860689 Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHH Q ss_conf 348999999997898799999548977---899999862189--82798179899999999999874 Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPN---GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLM 409 (420) Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~---~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I 409 (420) .+..++.++.++++.... ....|+..|+.| .|+|.+++-++|.+.+++|.++| T Consensus 122 ---------~~~~~~~~~~~~i~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~I 179 (179) T 1mjn_A 122 ---------DAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI 179 (179) T ss_dssp ---------GGGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHHHHHC T ss_pred ---------HHHHCCEEEEEEEEECCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC T ss_conf ---------9982986889999946886017999999857998633998799999999999997249 No 18 >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Probab=98.96 E-value=4.4e-11 Score=89.31 Aligned_cols=169 Identities=18% Similarity=0.161 Sum_probs=110.3 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC-CC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312-44 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN-IE 268 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 268 (420) ..++.|++|.||||. ..|++.++.++..++..... ...+.+++.|.+..... .+ T Consensus 5 ~~~iv~vlD~SGSM~--------------------~~~~~~~k~~~~~~l~~~~~-----~~d~~~~~~f~~~~~~~~~~ 59 (189) T 2x31_A 5 DRVLIFAVDASGSAA--------------------VARLSEAKGAVELLLGRAYA-----ARDHVSLITFRGTAAQVLLQ 59 (189) T ss_dssp CCEEEEEEECCTTSC--------------------C--CHHHHHHHHHHHHHSCT-----TTSCCCEEEESBSCCCBCTT T ss_pred CCEEEEEEEECCCCC--------------------CHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEEEECCCCCCCC T ss_conf 746999998175789--------------------26999999999999997256-----89679999999324313588 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC Q ss_conf 57784889999998640467887653889999998613101233455433477677877666248996068677777653 Q gi|254781110|r 269 PSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNV 348 (420) Q Consensus 269 lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~ 348 (420) ++.+....+..+..+ .+.|+|+...++..+++.+...+ .+...+++|++|||.+|...... T Consensus 60 ~~~~~~~~~~~~~~~---~~~GgT~~~~al~~a~~~~~~~~----------------~~~~~~~iillTDG~~~~~~~~~ 120 (189) T 2x31_A 60 PSRSLTQTKRQLQGL---PGGGGTPLASGMEMAMVTAKQAR----------------SRGMTPTIALLTDGRGNIALDGT 120 (189) T ss_dssp TCSCHHHHHHHHHHC---CCCBCCCCHHHHHHHHHHHHTCT----------------TTCSSEEEEECCBSCCSSCCTHH T ss_pred CCCCHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHC----------------CCCCCCEEEEECCCCCCCCCCCC T ss_conf 746899999998534---45798617899999999999722----------------45887779996479877687860 Q ss_pred HHH--------HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH-CCCCCEEEECCH--HHHHHHHHH Q ss_conf 489--------99999997898799999548977899999862-189827981798--999999999 Q gi|254781110|r 349 NTI--------KICDKAKENFIKIVTISINASPNGQRLLKTCV-SSPEYHYNVVNA--DSLIHVFQN 404 (420) Q Consensus 349 ~~~--------~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~ca-s~~~~yf~a~~~--~~L~~aF~~ 404 (420) ... ..+..++..||.+++|+++.... ..|+..| .++|.||...+. ++|.+++.. T Consensus 121 ~~~~~~~~~~~~~~~~~~~~gi~~~~i~~g~~~~--~~l~~iA~~~gG~y~~~~~~~~~~l~~~~~~ 185 (189) T 2x31_A 121 ANRELAGEQATKVARAIRASGMPAVIIDTAMRPN--PALVDLARTMDAHYIALPRATAHKMADVLGA 185 (189) T ss_dssp HHHGGGTCCCEEEEECTGGGGSCCTHHHHHHSSC--SSSCSTTTEEEESSTTTHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH--HHHHHHHHCCCCEEEECCCCCHHHHHHHHHH T ss_conf 4589999999999999872698379984797876--9999999761999997599999999999999 No 19 >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Probab=98.86 E-value=1.7e-09 Score=79.00 Aligned_cols=166 Identities=13% Similarity=0.119 Sum_probs=115.3 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCH--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 67889998999985104678765543022320487643124457784--8899999986404678876538899999986 Q gi|254781110|r 227 KMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSWGT--EKVRQYVTRDMDSLILKPTDSTPAMKQAYQI 304 (420) Q Consensus 227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~--~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~ 304 (420) -++..++-+..++..+. ....+++++.|++.......+.... ......++.+. ...|.|+...||..+... T Consensus 147 df~~~k~f~~~v~~~f~-----~~~~qvg~vqys~~~~~~f~l~d~~~~~~~~~~v~~i~--~~~g~T~Ta~ai~~~~~~ 219 (1095) T 3k6s_A 147 NFATMMNFVRAVISQFQ-----RPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVH--QLQGFTYTATAIQNVVHR 219 (1095) T ss_dssp HHHHHHHHHHHHHHSSC-----SSSEEEEEEEESSSEEEEECSHHHHSCSCGGGGTTTCC--CCCSCBCHHHHHHHHHTT T ss_pred CHHHHHHHHHHHHHHCC-----CCCEEEEEEEECCCEEEEEEHHHCCCCCCHHHHHHHEE--ECCCCCCHHHHHHHHHHH T ss_conf 06899999999986246-----67549999961373258887034333302678754146--136743078889999997 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC---CHHHHHHH Q ss_conf 131012334554334776778776662489960686777776534899999999789879999954897---78999998 Q gi|254781110|r 305 LTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASP---NGQRLLKT 381 (420) Q Consensus 305 L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~~---~~~~~l~~ 381 (420) +..... ...++.+|+||++|||+-+.... ......+.++..||.+|.||++... ....-|+. T Consensus 220 ~f~~~~-------------g~r~~a~kv~IviTDG~s~~d~~--~l~~~i~~~~~~gI~~~aIGvg~~~~~~~~~~eL~~ 284 (1095) T 3k6s_A 220 LFHASY-------------GARRDAAKILIVITDGKKEGDSL--DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELND 284 (1095) T ss_dssp TTSTTT-------------TCCSSSEEEEEEEESSCCBSCSS--CHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHT T ss_pred HHHHHH-------------CCCCCCCEEEEEEECCCCCCCCC--CHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHH T ss_conf 631642-------------68889841799992686456732--034444458648928999972543256433535421 Q ss_pred HHCCCC--CEEEECCHHHHHHHHHHHHHHHHCCEE Q ss_conf 621898--279817989999999999987420255 Q gi|254781110|r 382 CVSSPE--YHYNVVNADSLIHVFQNISQLMVHRKY 414 (420) Q Consensus 382 cas~~~--~yf~a~~~~~L~~aF~~Ia~~I~~lr~ 414 (420) .|+.|+ ++|.+++.++|.++.+.+.+.|..+.. T Consensus 285 iAs~p~~~~~f~v~~~~aL~~i~~~L~~~i~~ieg 319 (1095) T 3k6s_A 285 IASKPSQEHIFKVEDFDALKDIQNQLKEKIFAIEG 319 (1095) T ss_dssp TSCSSTTTSCCCBSCSGGGGSSTTTHHHHHHTCCC T ss_pred HHCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEC T ss_conf 20588740389935557766777764165256454 No 20 >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Probab=98.73 E-value=1.5e-07 Score=66.35 Aligned_cols=160 Identities=13% Similarity=0.134 Sum_probs=101.0 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC-CC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312-44 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN-IE 268 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 268 (420) +.|+.|++|.||||. .+++.+++.+..+++.+.... ...|++++.|.+..... .+ T Consensus 3 pvDl~fviD~SgSM~---------------------~~i~~~k~~~~~l~~~l~~~~---~~~r~g~v~f~d~~~~~~~~ 58 (212) T 2iue_A 3 SVDLYFLMGLSGSAQ---------------------GHLSNVQTLGSDLLKALNEIS---RSGRIGFGSIVNMTFQHILK 58 (212) T ss_dssp CEEEEEEEECCGGGT---------------------TTHHHHHHHHHHHHHHHHHHC---SCEEEEEEEESSSCEEEEEE T ss_pred CEEEEEEEECCCCHH---------------------HHHHHHHHHHHHHHHHHHHCC---CCEEEEEEECCCCCCCCCCC T ss_conf 468999998880526---------------------799999999999999997269---87089999705643433465 Q ss_pred CCCCHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 57784889999998640467-88765388999999861310123345543347767787766624899606867777765 Q gi|254781110|r 269 PSWGTEKVRQYVTRDMDSLI-LKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420) Q Consensus 269 lt~~~~~~~~~i~~~~~~~~-~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420) +|.+...+...++.+..... .++++...||.++...+...+ .+...|++|++|||..+..... T Consensus 59 ~t~~~~~~~~~i~~~~~~gg~d~~e~~~~al~~a~~~~~~~~----------------~~~~~~~ivl~tD~~~~~~~~~ 122 (212) T 2iue_A 59 LTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIG----------------WRNGTRFLVLVTDNDFHLAKDK 122 (212) T ss_dssp EESCHHHHHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHT----------------CCSSEEEEEEECSSCBCCTTGG T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC----------------CCCCCEEEEEEECCCCCCCCCC T ss_conf 576399999998630214898885069999999998766437----------------7777359999968986556630 Q ss_pred ----------------------------CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH-CCCCCEEEE Q ss_conf ----------------------------348999999997898799999548977899999862-189827981 Q gi|254781110|r 348 ----------------------------VNTIKICDKAKENFIKIVTISINASPNGQRLLKTCV-SSPEYHYNV 392 (420) Q Consensus 348 ----------------------------~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~ca-s~~~~yf~a 392 (420) ......+..++.++|.+....- .......+.-+ ..++.++.. T Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~---~~~~~~~~~l~~~~~g~~v~~ 193 (212) T 2iue_A 123 TLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVP---SRMVKTYEKLTTFIPKLTIGE 193 (212) T ss_dssp GGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHHHHHHTCEEEEEEE---HHHHHHHHHHHHHSTTCEEEE T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEC---CCHHHHHHHHHHHCCCCCHHH T ss_conf 24445311587157525653567776777799999999863975899974---532789999999738741266 No 21 >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Probab=97.93 E-value=0.00053 Score=43.19 Aligned_cols=146 Identities=11% Similarity=0.054 Sum_probs=91.6 Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC------- Q ss_conf 2012210223242233578766667534676653067889998999985104678765543022320487643------- Q gi|254781110|r 192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE------- 264 (420) Q Consensus 192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 264 (420) -+.+++|++++|.....+ ..++++.++.++..++...-... ...++|++.|++... T Consensus 9 aiv~~iDvs~sM~~~~~~--------------~~s~~~~a~~~~~~~~~~ki~~~---~~D~vglvlfgt~~t~N~l~~~ 71 (565) T 1jey_B 9 AVVLCMDVGFTMSNSIPG--------------IESPFEQAKKVITMFVQRQVFAE---NKDEIALVLFGTDGTDNPLSGG 71 (565) T ss_dssp EEEEEEECCGGGGCCBTT--------------BCCHHHHHHHHHHHHHHHHHHTT---CCCEEEEEEESCSSCBSTTCTT T ss_pred EEEEEEECCHHHCCCCCC--------------CCCHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCCCCCCCCC T ss_conf 199999898677676889--------------99979999999999999873389---9987999998057888755544 Q ss_pred -------CCCCCCC-CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf -------1244577-84889999998640467887653889999998613101233455433477677877666248996 Q gi|254781110|r 265 -------KNIEPSW-GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFL 336 (420) Q Consensus 265 -------~~~~lt~-~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~ 336 (420) ...++.. +...++. +..+. ....+.++...+|.++..+|...... ....++.||++ T Consensus 72 ~~~~~i~v~~~l~~~~~~~l~~-l~~~~-~~~~~~~d~~~aL~va~~~l~~~~~~--------------~k~~~~~Ivl~ 135 (565) T 1jey_B 72 DQYQNITVHRHLMLPDFDLLED-IESKI-QPGSQQADFLDALIVSMDVIQHETIG--------------KKFEKRHIEIF 135 (565) T ss_dssp TCSTTEEEEEEEECCCHHHHHH-HHTTC-CCCSSCCCHHHHHHHHHHHHHHHSSS--------------SCCSEEEEEEE T ss_pred CCCCCEEEEECCCCCCHHHHHH-HHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHC--------------CCCCCEEEEEE T ss_conf 5777559974588999999999-98653-68877878799999999999987502--------------55562489999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 068677777653489999999978987999995489 Q gi|254781110|r 337 TDGENNNFKSNVNTIKICDKAKENFIKIVTISINAS 372 (420) Q Consensus 337 TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~ 372 (420) |||...... .....+.+.+++.+|.+..|++... T Consensus 136 Td~~~p~~~--~~~~~i~~~l~~~~i~L~vi~~~~~ 169 (565) T 1jey_B 136 TDLSSRFSK--SQLDIIIHSLKKCDISLQFFLPFSL 169 (565) T ss_dssp CCCCSCCCC--TTHHHHHHHHHHTTEEEEEEESSCC T ss_pred ECCCCCCCH--HHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 279988687--8999999999865966999703666 No 22 >2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans} Probab=97.78 E-value=0.00055 Score=43.07 Aligned_cols=137 Identities=16% Similarity=0.136 Sum_probs=78.1 Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124457 Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS 270 (420) Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 270 (420) ..+.+.+|+||||.+....+.. ..+..+.+ +.-.++-. ....++.++.|++.... .+++ T Consensus 363 ~r~lv~iDvSGSM~~~~~~~~~-----------~~~~~~~a--~lla~~~~-------r~~~~~~vv~Fs~~~~~-v~l~ 421 (535) T 2nvo_A 363 TRHLLALDVSGSMTCGDVAGVP-----------GLTPNMAA--AAMSLIAL-------RTEPDALTMGFAEQFRP-LGIT 421 (535) T ss_dssp SEEEEEECCSGGGGSCCGGGCT-----------TCCHHHHH--HHHHHHHH-------HHSSEEEEEEEBSSEEE-CCCC T ss_pred CCEEEEEECCCCCCCCCCCCCC-----------CHHHHHHH--HHHHHHHH-------CCCCCEEEEEECCCEEE-ECCC T ss_conf 7379999765556664237875-----------37799999--99999980-------75898079842796587-1788 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHH Q ss_conf 78488999999864046788765388999999861310123345543347767787766624899606867777765348 Q gi|254781110|r 271 WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT 350 (420) Q Consensus 271 ~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~ 350 (420) .+.+ +...+..+. ..+.|+|++..+|.|+.+.-. ..+.+|++|||+.+.+... .. T Consensus 422 ~~~s-l~~~~~~~~-~~~~ggT~~~~~l~~a~~~~~----------------------~~D~iIllTD~e~~~g~~~-p~ 476 (535) T 2nvo_A 422 PRDT-LESAMQKAQ-SVSFGGTDCAQPILWAAQERL----------------------DVDTFVVYTDNETWAGQVH-PT 476 (535) T ss_dssp TTCC-HHHHHHHTC-CSSBCCCCTTHHHHHHHHTTC----------------------CCSEEEEEESSCCCCCSSC-HH T ss_pred CCCC-HHHHHHHHH-HCCCCCCHHHHHHHHHHHCCC----------------------CCCEEEEEECCCCCCCCCC-HH T ss_conf 8864-999999986-157899669999999985654----------------------5898999808997789999-99 Q ss_pred HHHH--HHHHHCCCEEEEEEECCCC Q ss_conf 9999--9999789879999954897 Q gi|254781110|r 351 IKIC--DKAKENFIKIVTISINASP 373 (420) Q Consensus 351 ~~~c--~~~k~~gi~i~tIgf~~~~ 373 (420) ..+- ....+.+.++++|++.... T Consensus 477 ~al~~yr~~~~~~~klv~v~l~~~~ 501 (535) T 2nvo_A 477 VALDQYAQKMGRAPKLIVVGLTATE 501 (535) T ss_dssp HHHHHHHHHHSCCCEEEEEETTCSC T ss_pred HHHHHHHHHHCCCCEEEEEEECCCC T ss_conf 9999999971899718999803788 No 23 >2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Probab=97.72 E-value=0.0005 Score=43.37 Aligned_cols=146 Identities=15% Similarity=0.165 Sum_probs=84.7 Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC- Q ss_conf 4434432012210223242233578766667534676653067889998999985104678765543022320487643- Q gi|254781110|r 186 GERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE- 264 (420) Q Consensus 186 ~~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 264 (420) ..+...|+.|..|.++||.. .++.+++....+.+.+.... ...|+|+..|-+... T Consensus 107 ~~~yPvDL~fLmD~TgSM~d---------------------dI~~lk~~~~~l~~~l~~~t---~~~rlGfgsf~Dk~~~ 162 (461) T 2vdr_B 107 VEDYPVDIYYLMDLSYSMKD---------------------DLWSIQNLGTKLATQMRKLT---SNLRIGFGAFVDKPVS 162 (461) T ss_dssp CSCCCEEEEEEEECSGGGGG---------------------GHHHHHHHHHHHHHHHHHHC---TTEEEEEEEECCCSST T ss_pred CCCCCCCEEEEEECCCCHHH---------------------HHHHHHHHHHHHHHHHHHHC---CCCEEEEEEEEEECCC T ss_conf 67787447999947746699---------------------99999999999999998528---8847999998973477 Q ss_pred -----------------------------CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-HCCCCCCCCC Q ss_conf -----------------------------1244577848899999986404678876538899999986-1310123345 Q gi|254781110|r 265 -----------------------------KNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQI-LTSDKKRSFF 314 (420) Q Consensus 265 -----------------------------~~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~-L~~~~~~~~~ 314 (420) ...+||.+..++.+.++.+. +.||-..+++..-|... +.-.+.-.| T Consensus 163 p~~~~~~~~~l~~Pc~~~~~~c~~~f~~~~~l~lT~d~~~F~~~V~~~~---~sGggD~PE~~~dAL~qa~vc~~~igW- 238 (461) T 2vdr_B 163 PYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQS---VSRNRDAPEGGFDAIMQATVCDEKIGW- 238 (461) T ss_dssp TTSCCCSTHHHHCTTGGGTSCCCCCCSEEEEEEEESCHHHHHHHHHTCC---CCCCSBSSBCHHHHHHHHHHCHHHHTC- T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCEE---CCCCCCCCCCHHHHHHHHHHHHHHCCC- T ss_conf 6444466655048664678776787330452468878999999875036---547986776689999999986310787- Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCC------------------------CC-----CCCHHHHHHHHHHHCCCE-E Q ss_conf 54334776778776662489960686777------------------------77-----653489999999978987-9 Q gi|254781110|r 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNN------------------------FK-----SNVNTIKICDKAKENFIK-I 364 (420) Q Consensus 315 ~~~~~~~~~~~~~~~~k~iil~TDG~~~~------------------------~~-----~~~~~~~~c~~~k~~gi~-i 364 (420) +++.+|++|++||.-.+. +. .......+.+.+++++|. | T Consensus 239 -----------R~~a~rilvliTDA~~H~agDgkl~giv~pnDg~Chl~~~~~y~~s~~~DYPSv~ql~~~l~e~~i~pI 307 (461) T 2vdr_B 239 -----------RNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLI 307 (461) T ss_dssp -----------CTTSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEE T ss_pred -----------CCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE T ss_conf -----------868759999989788433687544104438876315379887665555778999999999986496799 Q ss_pred EEEEEC Q ss_conf 999954 Q gi|254781110|r 365 VTISIN 370 (420) Q Consensus 365 ~tIgf~ 370 (420) |.|.-. T Consensus 308 FAVt~~ 313 (461) T 2vdr_B 308 FAVTEN 313 (461) T ss_dssp EEEEGG T ss_pred EEECCC T ss_conf 996553 No 24 >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Probab=97.62 E-value=0.0034 Score=37.92 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=73.9 Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124457 Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS 270 (420) Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 270 (420) ..+...+|+||||.....+. ..+..+.+.--.-.+... . ....++.|++...+ .+++ T Consensus 369 ~r~liavDvSGSM~~~~~g~-------------~~~~~~~aa~la~~~~~~-~--------~~~~vv~Fs~~~~~-l~~~ 425 (538) T 1yvr_A 369 KRFLLAIDVSASMNQRVLGS-------------ILNASVVAAAMCMLVART-E--------KDSHMVAFSDEMLP-CPIT 425 (538) T ss_dssp CCEEEEEECSGGGGSBSTTS-------------SCBHHHHHHHHHHHHHHH-C--------SSEEEEEESSSEEC-CSCC T ss_pred CEEEEEEECCCCCCCCCCCC-------------CCCHHHHHHHHHHHHHHH-C--------CCCEEEEECCCEEE-CCCC T ss_conf 63899997645543744489-------------757999999999999985-7--------99879997693587-2777 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHH Q ss_conf 78488999999864046788765388999999861310123345543347767787766624899606867777765348 Q gi|254781110|r 271 WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT 350 (420) Q Consensus 271 ~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~ 350 (420) ... .+...+..+. ..++|+|++..+|.|+.+... .-+++|++|||+.+.+.... . T Consensus 426 ~~~-~l~~~~~~~~-~~~~ggT~~~~~i~~a~~~~~----------------------~~D~~IvlTD~e~~~g~~~p-~ 480 (538) T 1yvr_A 426 VNM-LLHEVVEKMS-DITMGSTDCALPMLWAQKTNT----------------------AADIFIVFTDCETNVEDVHP-A 480 (538) T ss_dssp TTS-CHHHHHHHHT-TCCCSCCCTTHHHHHHHHTTC----------------------CCSEEEEEECCCCCSSSCCH-H T ss_pred HHH-HHHHHHHHHH-CCCCCCCCHHHHHHHHHHCCC----------------------CCCEEEEEECCCCCCCCCCH-H T ss_conf 101-4999999984-367898618999999996155----------------------68989998179977898899-9 Q ss_pred HHHHH--HHHHCCCEEEEEEECCC Q ss_conf 99999--99978987999995489 Q gi|254781110|r 351 IKICD--KAKENFIKIVTISINAS 372 (420) Q Consensus 351 ~~~c~--~~k~~gi~i~tIgf~~~ 372 (420) ..+-+ ...+.+.++++|++... T Consensus 481 ~al~~Yr~k~~~~ak~v~v~l~~~ 504 (538) T 1yvr_A 481 TALKQYREKMGIPAKLIVCAMTSN 504 (538) T ss_dssp HHHHHHHHHHTCCCEEEEEECSSS T ss_pred HHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999998489975999985689 No 25 >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Probab=97.46 E-value=0.00093 Score=41.58 Aligned_cols=127 Identities=10% Similarity=0.066 Sum_probs=69.2 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 3124457784889999998640467887653889999998613-----10123345543347767787766624899606 Q gi|254781110|r 264 EKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILT-----SDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTD 338 (420) Q Consensus 264 ~~~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~-----~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TD 338 (420) ....+||.+...+.+.+++.. .+|+-..++|-.-|..... =+| ++..+|++|+.|| T Consensus 191 ~~~~~lt~~~~~f~~~v~~~~---~s~n~d~pe~~~dal~q~~vc~~~igw----------------r~~~~~~~v~~tD 251 (690) T 3fcs_B 191 KHVLTLTDQVTRFNEEVKKQS---VSRNRDAPEGGFDAIMQATVCDEKIGW----------------RNDASHLLVFTTD 251 (690) T ss_dssp EEEEEEESCHHHHHHHHTTCC---CCCCSSSSBCHHHHHHHHHHCHHHHTC----------------CSSSEEEEEEEES T ss_pred EEECCCCCCHHHHHHHHHHEE---CCCCCCCCCHHHHHHHHHHHCCCCCCC----------------CCCCEEEEEEEEC T ss_conf 465456667899999875255---116877875046678776523122356----------------7897699999806 Q ss_pred CCCCCC------------------------C-----CCCHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHHHCCCCC Q ss_conf 867777------------------------7-----653489999999978987-9999954897789999986218982 Q gi|254781110|r 339 GENNNF------------------------K-----SNVNTIKICDKAKENFIK-IVTISINASPNGQRLLKTCVSSPEY 388 (420) Q Consensus 339 G~~~~~------------------------~-----~~~~~~~~c~~~k~~gi~-i~tIgf~~~~~~~~~l~~cas~~~~ 388 (420) .-.+.. . .......+.+++++++|. ||.|.-.....-+.|-+.-. ...- T Consensus 252 ~~~H~agDg~l~gi~~pnd~~chl~~~~~y~~~~~~dyPs~~q~~~~l~~~~i~~ifavt~~~~~~y~~l~~~~~-~~~~ 330 (690) T 3fcs_B 252 AKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIP-GTTV 330 (690) T ss_dssp SCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHST-TCEE T ss_pred CCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCC-CCEE T ss_conf 731125665423563167761140798852556767789999999999872967999976654006899997548-7526 Q ss_pred EEEECCHH----HHHHHHHHHHHHHH Q ss_conf 79817989----99999999998742 Q gi|254781110|r 389 HYNVVNAD----SLIHVFQNISQLMV 410 (420) Q Consensus 389 yf~a~~~~----~L~~aF~~Ia~~I~ 410 (420) .-.+.+.. =|.++|++|+..|. T Consensus 331 ~~l~~dssnv~~li~~~y~~~~s~v~ 356 (690) T 3fcs_B 331 GVLSMDSSNVLQLIVDAYGKIRSKVE 356 (690) T ss_dssp EEECTTCTTHHHHHHHHHHHHTTCEE T ss_pred EECCCCCHHHHHHHHHHHHHHHCEEE T ss_conf 87057861599999999987526467 No 26 >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Probab=95.96 E-value=0.012 Score=34.36 Aligned_cols=126 Identities=12% Similarity=0.131 Sum_probs=66.1 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 43124457784889999998640467887653889999998613-----1012334554334776778776662489960 Q gi|254781110|r 263 VEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILT-----SDKKRSFFTNFFRQGVKIPSLPFQKFIIFLT 337 (420) Q Consensus 263 ~~~~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~-----~~~~~~~~~~~~~~~~~~~~~~~~k~iil~T 337 (420) ...+.+||.+...+.+.+++.. .+|+-..++|-.-|..... =+|+ +.+|++|+.| T Consensus 182 ~~~~~~lt~~~~~f~~~~~~~~---~~~n~d~pe~~~da~~q~~~c~~~igwr-----------------~~~~~~~~~t 241 (687) T 3k6s_B 182 FRHVLKLTNNSNQFQTEVGKQL---ISGNLDAPEGGLDAMMQVAACPEEIGWR-----------------NVTRLLVFAT 241 (687) T ss_dssp CEEEEEEESCSHHHHHHHHTSC---CCCCSSSSCCHHHHHHHHTTCHHHHCCC-----------------SSCCEEEEEC T ss_pred EEEECCCCCCHHHHHHHHHHEE---EECCCCCCCCHHHHHHHHHHCCCCCCCC-----------------CCEEEEEEEC T ss_conf 1542256677899999875167---0357768650166888877502223645-----------------7548999981 Q ss_pred CCCCCCCC----------------------------CCCHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHHHCCCCC Q ss_conf 68677777----------------------------653489999999978987-9999954897789999986218982 Q gi|254781110|r 338 DGENNNFK----------------------------SNVNTIKICDKAKENFIK-IVTISINASPNGQRLLKTCVSSPEY 388 (420) Q Consensus 338 DG~~~~~~----------------------------~~~~~~~~c~~~k~~gi~-i~tIgf~~~~~~~~~l~~cas~~~~ 388 (420) |.-.+..- .......+-++++.++|. ||.|.=..-.--+. |..--. ++. T Consensus 242 d~~~h~agdg~l~gi~~pnd~~chl~~~~y~~~~~~dyps~~~~~~~~~~~~i~~ifavt~~~~~~y~~-l~~~~~-~~~ 319 (687) T 3k6s_B 242 DDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEK-LTEIIP-KSA 319 (687) T ss_dssp SSCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHH-HHHHSS-SCC T ss_pred CCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHH-HHHHCC-CCE T ss_conf 687442676423104047887317048830356666778989999999864925999976644436899-997557-750 Q ss_pred EE-EE---CCH-HHHHHHHHHHHHHHH Q ss_conf 79-81---798-999999999998742 Q gi|254781110|r 389 HY-NV---VNA-DSLIHVFQNISQLMV 410 (420) Q Consensus 389 yf-~a---~~~-~~L~~aF~~Ia~~I~ 410 (420) .= .+ .|- +=|.++|++|+..|. T Consensus 320 ~~~l~~ds~ni~~li~~~y~~i~s~v~ 346 (687) T 3k6s_B 320 VGELSEDSSNVVQLIKNAYNKLSSRVF 346 (687) T ss_dssp EEECCTTCCSCGGGTTTHHHHHSSCCC T ss_pred EEEECCCCHHHHHHHHHHHHHHHCEEE T ss_conf 476146647799999999986513799 No 27 >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* Probab=64.07 E-value=5.6 Score=16.99 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=15.7 Q ss_pred CCEEEEEECCCCCCCCCC---CHHHHHHHHHHHCCCEEEEEEEC Q ss_conf 624899606867777765---34899999999789879999954 Q gi|254781110|r 330 QKFIIFLTDGENNNFKSN---VNTIKICDKAKENFIKIVTISIN 370 (420) Q Consensus 330 ~k~iil~TDG~~~~~~~~---~~~~~~c~~~k~~gi~i~tIgf~ 370 (420) .|.|+|+||+.+-..... ......+..+++.||.+-.+.++ T Consensus 163 ~krI~lfTd~d~P~~~d~~~~~~~~~~~~dl~~~gI~i~~~~i~ 206 (609) T 1jey_A 163 HKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLK 206 (609) T ss_dssp EEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBC T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCC T ss_conf 75799986899878885177999999999999709057773357 No 28 >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Probab=54.88 E-value=8 Score=15.98 Aligned_cols=158 Identities=10% Similarity=0.083 Sum_probs=87.7 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC------------------------------------CCCCCCHHH Q ss_conf 99899998510467876554302232048764312------------------------------------445778488 Q gi|254781110|r 232 KNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN------------------------------------IEPSWGTEK 275 (420) Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~lt~~~~~ 275 (420) ....+.+...++.......+.++|+++|++..... .++...... T Consensus 323 ~~~~~~i~~~L~~l~~~~~~~~VglItfd~~V~~y~l~~~~~~~~~~~~~~~~~~~~dl~~~f~p~~~~~l~~l~e~~~~ 402 (926) T 1m2v_B 323 ATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQN 402 (926) T ss_dssp HHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTTTHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEHHHHHHH T ss_conf 99999999999746367877369999977848998357777764322467520241014540567875434336887999 Q ss_pred HHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC------- Q ss_conf 9999998640467---887653889999998613101233455433477677877666248996068677777------- Q gi|254781110|r 276 VRQYVTRDMDSLI---LKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK------- 345 (420) Q Consensus 276 ~~~~i~~~~~~~~---~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~------- 345 (420) +...++.+..... ...+..+.++..+...|.... .| |++++.|-.+.+. T Consensus 403 i~~lL~~L~~~~~~~~~~~~~lG~Al~~a~~ll~~~g--------------------Gk-I~~f~sg~pt~G~G~l~~r~ 461 (926) T 1m2v_B 403 IETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG--------------------GK-IIVVSGTLPNLGIGKLQRRN 461 (926) T ss_dssp HHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTTC--------------------EE-EEEEESSCCCSSTTCCCCCC T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC--------------------CE-EEEEECCCCCCCCCCCCCCC T ss_conf 9999984256406888873239999999999875479--------------------86-99994789877886342255 Q ss_pred -----------------CCCHHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHHHCCCCCEEEE-----CCHHHHHHHH Q ss_conf -----------------6534899999999789879999954897-7899999862189827981-----7989999999 Q gi|254781110|r 346 -----------------SNVNTIKICDKAKENFIKIVTISINASP-NGQRLLKTCVSSPEYHYNV-----VNADSLIHVF 402 (420) Q Consensus 346 -----------------~~~~~~~~c~~~k~~gi~i~tIgf~~~~-~~~~~l~~cas~~~~yf~a-----~~~~~L~~aF 402 (420) .+.--+.++..+.+.+|.|....+..+. +-..+-.-|..++|..|.. ....+..+-+ T Consensus 462 ~~~~~~~~~e~~~~~~~~~~fY~~la~~~~~~~isvdlF~~~~~~~dla~l~~l~~~TGG~i~~y~~f~~~~~~d~~~l~ 541 (926) T 1m2v_B 462 ESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFS 541 (926) T ss_dssp C----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHH T ss_pred CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH T ss_conf 53334660344542462179999999999977907999980487677388777776348559981787644367789999 Q ss_pred HHHHHHHH Q ss_conf 99998742 Q gi|254781110|r 403 QNISQLMV 410 (420) Q Consensus 403 ~~Ia~~I~ 410 (420) .++.+.+. T Consensus 542 ~dl~~~~~ 549 (926) T 1m2v_B 542 TEFAKHIS 549 (926) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99997533 No 29 >1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1 Probab=51.79 E-value=7.6 Score=16.11 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=9.6 Q ss_pred HCCCEEEEEEECCCCC Q ss_conf 7898799999548977 Q gi|254781110|r 359 ENFIKIVTISINASPN 374 (420) Q Consensus 359 ~~gi~i~tIgf~~~~~ 374 (420) -.+...+.|-||-+.+ T Consensus 101 ~~~~~~~aiVFG~~a~ 116 (157) T 1kjn_A 101 ILNTETLAIIFDRDAD 116 (157) T ss_dssp HHCSEEEEEEECSCHH T ss_pred HHCCCEEEEEECCCCC T ss_conf 7278748999337743 No 30 >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Probab=48.49 E-value=10 Score=15.33 Aligned_cols=158 Identities=9% Similarity=0.085 Sum_probs=89.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC-----------------------------CCCCCCHHHHHH Q ss_conf 788999899998510467876554302232048764312-----------------------------445778488999 Q gi|254781110|r 228 MAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN-----------------------------IEPSWGTEKVRQ 278 (420) Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~lt~~~~~~~~ 278 (420) ++.+.+++...++.+ + .....++|+++|++..... .++......+.. T Consensus 179 l~~~~~ai~~~l~~l---~-~~~~~~VglItf~~~V~~~~~~~~~~~~~~~v~~d~~~~~~p~~~~~l~~l~e~~~~i~~ 254 (751) T 3eh1_A 179 LTILCQSLLENLDKL---P-GDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKD 254 (751) T ss_dssp HHHHHHHHHHHTTTS---S-CCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGGGTSEETTTTHHHHHH T ss_pred HHHHHHHHHHHHHHC---C-CCCCEEEEEEEECCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHHHH T ss_conf 999999999999747---7-887608999998997899846898665326741486312467876468437998999999 Q ss_pred HHHHHHHCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC---------- Q ss_conf 9998640467---887653889999998613101233455433477677877666248996068677777---------- Q gi|254781110|r 279 YVTRDMDSLI---LKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK---------- 345 (420) Q Consensus 279 ~i~~~~~~~~---~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~---------- 345 (420) .++.+..... ..++..+.++..+...|.... -.++++++|-.+.+. T Consensus 255 ~L~~L~~~~~~~~~~~~~lg~Al~~a~~~l~~~g---------------------G~i~~f~~g~pt~GpG~l~~~~~~~ 313 (751) T 3eh1_A 255 LLNALPNMFTNTRETHSALGPALQAAFKLMSPTG---------------------GRVSVFQTQLPSLGAGLLQSREDPN 313 (751) T ss_dssp HHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTTC---------------------EEEEEEECSCCCSSTTCCCCCCCSC T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC---------------------CEEEEEECCCCCCCCCCEECCCCCC T ss_conf 9985455414887764108999999999887329---------------------7599995679978898321266766 Q ss_pred -------------CCCHHHHHHHHHHHCCCEEEEEEECCCCC-HHHHHHHHHCCCCCEEEECC------HHHHHHHHHHH Q ss_conf -------------65348999999997898799999548977-89999986218982798179------89999999999 Q gi|254781110|r 346 -------------SNVNTIKICDKAKENFIKIVTISINASPN-GQRLLKTCVSSPEYHYNVVN------ADSLIHVFQNI 405 (420) Q Consensus 346 -------------~~~~~~~~c~~~k~~gi~i~tIgf~~~~~-~~~~l~~cas~~~~yf~a~~------~~~L~~aF~~I 405 (420) ....-..++..+.+.||.|....+..+.- -..+-.-|..++|..|..++ ..++...++++ T Consensus 314 ~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~l~~dl 393 (751) T 3eh1_A 314 QRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDL 393 (751) T ss_dssp GGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHH T ss_pred CCCCHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH T ss_conf 67854567651405789999999999769479999945877787998889864786599936866433657899999999 Q ss_pred HHHHH Q ss_conf 98742 Q gi|254781110|r 406 SQLMV 410 (420) Q Consensus 406 a~~I~ 410 (420) .+.+. T Consensus 394 ~~~l~ 398 (751) T 3eh1_A 394 KRYLT 398 (751) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 98755 No 31 >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* Probab=44.06 E-value=12 Score=14.90 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=15.2 Q ss_pred HHHHHHHHHHCCCEEEEEEECCC Q ss_conf 89999999978987999995489 Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINAS 372 (420) Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~~ 372 (420) +..++..+...||++.+|.-|.= T Consensus 169 tr~lA~e~~~~gIrVN~V~PG~i 191 (261) T 1gee_A 169 TETLALEYAPKGIRVNNIGPGAI 191 (261) T ss_dssp HHHHHHHHGGGTCEEEEEEECSB T ss_pred HHHHHHHHHHHCCEEEEEEECCC T ss_conf 99999996354919999960979 No 32 >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Probab=42.75 E-value=12 Score=14.77 Aligned_cols=24 Identities=13% Similarity=-0.031 Sum_probs=16.4 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999789879999954897 Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINASP 373 (420) Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~~~ 373 (420) ++.++..+...||++.+|.-|.=. T Consensus 166 t~~lA~el~~~gIrVN~I~PG~v~ 189 (247) T 2hq1_A 166 TKSIAKEFAAKGIYCNAVAPGIIK 189 (247) T ss_dssp HHHHHHHHGGGTEEEEEEEECSBC T ss_pred HHHHHHHHHCCCEEEEEEECCCCC T ss_conf 999999972149699998549787 No 33 >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Probab=40.11 E-value=13 Score=14.51 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=17.3 Q ss_pred HHHHHHHHHHCCCEEEEEEECCC Q ss_conf 89999999978987999995489 Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINAS 372 (420) Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~~ 372 (420) ++.++..+...||++..|.-|.= T Consensus 186 tr~lA~e~~~~gIrVN~V~PG~i 208 (269) T 3gk3_A 186 TKTLALETAKRGITVNTVSPGYL 208 (269) T ss_dssp HHHHHHHHGGGTEEEEEEEECSB T ss_pred HHHHHHHHHHCCCEEEEECCCCC T ss_conf 99999988651958987634857 No 34 >2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens} Probab=39.56 E-value=14 Score=14.45 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=27.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0388569999999999999999999999999999 Q gi|254781110|r 17 SEKANFSIIFALSVMSFLLLIGFLIYVLDWHYKK 50 (420) Q Consensus 17 ~~~G~vai~fal~l~~ll~~~g~aVD~~r~~~~k 50 (420) ...|..++++.|+++.+++++.++|-++..-..| T Consensus 46 ~~d~~~~~lYIL~vmgffgff~~gImlsyiRSKk 79 (138) T 2k21_A 46 SGDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKK 79 (138) T ss_dssp CTTCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9998522679999999999999999998778875 No 35 >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Probab=37.65 E-value=15 Score=14.26 Aligned_cols=159 Identities=11% Similarity=0.087 Sum_probs=87.5 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC------------------------------------CCCCCCHH Q ss_conf 999899998510467876554302232048764312------------------------------------44577848 Q gi|254781110|r 231 LKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN------------------------------------IEPSWGTE 274 (420) Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~lt~~~~ 274 (420) ++.........++..+....+.++|+++|++..... .++..... T Consensus 206 l~~~~~~i~~~L~~lp~~~~~~~Vg~Itfd~~v~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~p~~~~~lv~l~e~~~ 285 (810) T 1pcx_A 206 LATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQ 285 (810) T ss_dssp HHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTTTHH T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEHHHHHH T ss_conf 99999999998751436787605999995882899965677776433334443244444233146787665120689799 Q ss_pred HHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC------ Q ss_conf 89999998640467---887653889999998613101233455433477677877666248996068677777------ Q gi|254781110|r 275 KVRQYVTRDMDSLI---LKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK------ 345 (420) Q Consensus 275 ~~~~~i~~~~~~~~---~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~------ 345 (420) .+...++.+..... ...+..+.++..|...|.... .| +++++.|-.|.+. T Consensus 286 ~i~~lL~~L~~~~~~~~~~~~alG~Al~~a~~ll~~~g--------------------Gk-I~~f~s~~pt~GpG~l~~r 344 (810) T 1pcx_A 286 NIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG--------------------GK-IIVVSGTLPNLGIGKLQRR 344 (810) T ss_dssp HHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTC--------------------EE-EEEEESSCCCSSTTCCCC- T ss_pred HHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHCCC--------------------CE-EEEEECCCCCCCCCCCCCC T ss_conf 99999985545316988873229999999999874579--------------------86-9999577986788632104 Q ss_pred ------------------CCCHHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHHHCCCCCEEE-----ECCHHHHHHH Q ss_conf ------------------6534899999999789879999954897-789999986218982798-----1798999999 Q gi|254781110|r 346 ------------------SNVNTIKICDKAKENFIKIVTISINASP-NGQRLLKTCVSSPEYHYN-----VVNADSLIHV 401 (420) Q Consensus 346 ------------------~~~~~~~~c~~~k~~gi~i~tIgf~~~~-~~~~~l~~cas~~~~yf~-----a~~~~~L~~a 401 (420) .+..-+.++..+.+.||.|....+..+. +-..+-.-|..++|..|. +....+..+- T Consensus 345 ~~~~~~~~~~~~~~l~~~~~~fY~~la~~~~~~~isvDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~d~~~l 424 (810) T 1pcx_A 345 NESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKF 424 (810) T ss_dssp -------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHH T ss_pred CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH T ss_conf 55444577345565325378999999999998793599986047777728888888745846998068664434578999 Q ss_pred HHHHHHHHH Q ss_conf 999998742 Q gi|254781110|r 402 FQNISQLMV 410 (420) Q Consensus 402 F~~Ia~~I~ 410 (420) +.++.+.+. T Consensus 425 ~~dl~~~l~ 433 (810) T 1pcx_A 425 STEFAKHIS 433 (810) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999998656 No 36 >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3itd_A Probab=34.49 E-value=16 Score=13.94 Aligned_cols=24 Identities=4% Similarity=0.072 Sum_probs=17.8 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999789879999954897 Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINASP 373 (420) Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~~~ 373 (420) ++.++..+...||+|..|.-|.=. T Consensus 178 tk~lA~el~~~gIrVN~V~PG~i~ 201 (270) T 3is3_A 178 VRIFSKDCGDKKITVNAVAPGGTV 201 (270) T ss_dssp HHHHHHHHGGGTCEEEEEEECSBC T ss_pred HHHHHHHHCCCCEEEEEEECCCCC T ss_conf 999999857049299999609898 No 37 >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Probab=32.30 E-value=18 Score=13.71 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=80.7 Q ss_pred HHHHHHHHHHHHHHCCCC-CCCCCCCCEEEECCCCCCCC-----------------------------CCCCCCCHHHHH Q ss_conf 788999899998510467-87655430223204876431-----------------------------244577848899 Q gi|254781110|r 228 MAALKNALLLFLDSIDLL-SHVKEDVYMGLIGYTTRVEK-----------------------------NIEPSWGTEKVR 277 (420) Q Consensus 228 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------------------~~~lt~~~~~~~ 277 (420) +....+++...++.+... .......++|+++|++.... ..++......+. T Consensus 196 ~~~~~~~l~~~l~~lp~~~~~~~~~~~VglItf~~~v~~~~~~~~~~~~~~~v~~d~~~~~~p~~~~~l~~l~e~~~~i~ 275 (770) T 3efo_B 196 VKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIH 275 (770) T ss_dssp HHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTSCCCCCSSSSSBCTTTTHHHHH T ss_pred HHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 99999999999985622230367753799998167189955788867540341158543465564452120899899999 Q ss_pred HHHHHHHHC---CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC----------- Q ss_conf 999986404---678876538899999986131012334554334776778776662489960686777----------- Q gi|254781110|r 278 QYVTRDMDS---LILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNN----------- 343 (420) Q Consensus 278 ~~i~~~~~~---~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~----------- 343 (420) +.++.+... .....|..+.++..+...|.....+ .|++++. +|..+. T Consensus 276 ~~L~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~~~g------------------Gkii~f~-s~~P~~~gpg~l~~r~~ 336 (770) T 3efo_B 276 NLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCP------------------GKLFIFH-SSLPTAEAPGKLKNRDD 336 (770) T ss_dssp HHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCC------------------EEEEEEE-CSCCCSSSTTCCCCCCC T ss_pred HHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC------------------CEEEEEE-CCCCCCCCCCCCCCCCC T ss_conf 9986231220578888743899999999997156999------------------6399996-57998888744446543 Q ss_pred -------------CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH-HHHCCCCCEEEECC Q ss_conf -------------7765348999999997898799999548977899999-86218982798179 Q gi|254781110|r 344 -------------FKSNVNTIKICDKAKENFIKIVTISINASPNGQRLLK-TCVSSPEYHYNVVN 394 (420) Q Consensus 344 -------------~~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~-~cas~~~~yf~a~~ 394 (420) ......-..++..+.++||.|....+..+.-.-..|. -|..++|..|..++ T Consensus 337 ~~~~~~~~e~~~~~~~~~fY~~La~~~~~~~isvDlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~ 401 (770) T 3efo_B 337 KKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNN 401 (770) T ss_dssp CCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTT T ss_pred CCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECC T ss_conf 22357722343036217999999999998594699999448767879999999864966999689 No 38 >3ijr_A Oxidoreductase, short chain dehydrogenase/reductase family; structural genomics, infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Probab=31.68 E-value=18 Score=13.64 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 4899999999789879999954897 Q gi|254781110|r 349 NTIKICDKAKENFIKIVTISINASP 373 (420) Q Consensus 349 ~~~~~c~~~k~~gi~i~tIgf~~~~ 373 (420) .+..++..+...||++.+|.-|.=. T Consensus 206 ltr~lA~Ela~~gIrVN~I~PG~v~ 230 (291) T 3ijr_A 206 FTRSLSQSLVQKGIRVNGVAPGPIW 230 (291) T ss_dssp HHHHHHHHHGGGTCEEEEEEECSBC T ss_pred HHHHHHHHHHHCCEEEEEEECCCCC T ss_conf 9999999863319089999648898 No 39 >2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus} Probab=27.44 E-value=22 Score=13.18 Aligned_cols=22 Identities=27% Similarity=0.307 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHCCCCCHHH Q ss_conf 7899999999886303885699 Q gi|254781110|r 3 LLSRFRFYFKKGIASEKANFSI 24 (420) Q Consensus 3 ~~~~~~~~~~~~~~~~~G~vai 24 (420) -+.|||+-++++++.-+-.+-+ T Consensus 2 rfkrfrkkfkklfkklspvipl 23 (27) T 2ket_A 2 RFKRFRKKFKKLFKKLSPVIPL 23 (27) T ss_dssp CHHHHHHHHHHHHHHHSCSCHH T ss_pred CHHHHHHHHHHHHHHCCCCCCH T ss_conf 3789999999999863753201 No 40 >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Probab=26.62 E-value=22 Score=13.08 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=17.0 Q ss_pred HHHHHHHHHHCCCEEEEEEECCC Q ss_conf 89999999978987999995489 Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINAS 372 (420) Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~~ 372 (420) ++.++..+...||++.+|.-|.= T Consensus 166 tr~lA~El~~~gIrVN~I~PG~i 188 (250) T 2cfc_A 166 TKSVAVDYAGSGIRCNAVCPGMI 188 (250) T ss_dssp HHHHHHHHGGGTEEEEEEEECSB T ss_pred HHHHHHHHHHCCEEEEEEEECCC T ss_conf 99999996240959999610878 No 41 >3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* Probab=26.14 E-value=23 Score=13.03 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=4.6 Q ss_pred HHHHCCCEEEEEEE Q ss_conf 99978987999995 Q gi|254781110|r 356 KAKENFIKIVTISI 369 (420) Q Consensus 356 ~~k~~gi~i~tIgf 369 (420) .+++..-.+..|-| T Consensus 408 ~i~~~~~d~i~vn~ 421 (561) T 3igz_B 408 ALKSGMYNVVRINF 421 (561) T ss_dssp HHHHSCCSEEEEEE T ss_pred HHHCCCCCEEEECC T ss_conf 87557988899846 No 42 >2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A Probab=25.92 E-value=23 Score=13.00 Aligned_cols=37 Identities=22% Similarity=0.118 Sum_probs=26.9 Q ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEE Q ss_conf 2489960686777776534899999999789879999 Q gi|254781110|r 331 KFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTI 367 (420) Q Consensus 331 k~iil~TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tI 367 (420) ..||||-|+.......-..+..+++.+|++|.++.|+ T Consensus 149 g~IvL~Hd~~~~~~~t~~aL~~li~~lk~~Gy~fvtl 185 (216) T 2c71_A 149 GTIILLHDVQPEPHPTPEALDIIIPTLKSRGYEFVTL 185 (216) T ss_dssp TBEEEEESCCSSSCCHHHHHHHHHHHHHHTTCEECCH T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEH T ss_conf 9499977999972069999999999999789999888 No 43 >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reductase; structural genomics, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Probab=25.84 E-value=23 Score=12.99 Aligned_cols=22 Identities=14% Similarity=0.073 Sum_probs=13.9 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 8999999997898799999548 Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINA 371 (420) Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~ 371 (420) .+.++..+...||++.+|.-|. T Consensus 172 t~~lA~el~~~gIrVN~V~PG~ 193 (255) T 3icc_A 172 TFTLAKQLGARGITVNAILPGF 193 (255) T ss_dssp HHHHHHHHGGGTCEEEEEEECC T ss_pred HHHHHHHHHHHCCEEEEEEECC T ss_conf 9999999746597897871087 No 44 >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Probab=25.38 E-value=9.6 Score=15.47 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=38.5 Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCC Q ss_conf 34899999999789879999954897789999986218982798179899999999999874202 Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVHR 412 (420) Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~~aF~~Ia~~I~~l 412 (420) .....+++.++++||.+..|.+..-+.+...++.|.+ ..| .-+.-+.+.++|+++.+++.=+ T Consensus 357 ~~~~~~~~~L~~~Gi~v~~i~~Ptvp~g~~rlR~~~~-a~h--T~edId~~v~~l~~v~~~lg~~ 418 (427) T 2w8t_A 357 EQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSIC-AEH--TPAQIQTVLGMFQAAGRAVGVI 418 (427) T ss_dssp HHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECC-TTC--CHHHHHHHHHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEC-CCC--CHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999848945976789988999725999847-669--9999999999999999982967 No 45 >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} Probab=24.46 E-value=24 Score=12.83 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=14.8 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 8999999997898799999548 Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINA 371 (420) Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~ 371 (420) ...++..+...||++..|.-|. T Consensus 165 t~~lA~el~~~gIrVN~I~PG~ 186 (246) T 3osu_A 165 TKSAARELASRGITVNAVAPGF 186 (246) T ss_dssp HHHHHHHHGGGTEEEEEEEECS T ss_pred HHHHHHHHHHHCCEEEEECCCC T ss_conf 9999999606684896663186 No 46 >3afn_B A1-R, 4-deoxy-L-erythro-5-hexoseulose-uronic acid reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Probab=22.81 E-value=26 Score=12.62 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=14.8 Q ss_pred HHHHHHHHHCCCEEEEEEECCC Q ss_conf 9999999978987999995489 Q gi|254781110|r 351 IKICDKAKENFIKIVTISINAS 372 (420) Q Consensus 351 ~~~c~~~k~~gi~i~tIgf~~~ 372 (420) ..++..+...||+|.+|.-|.= T Consensus 176 k~lA~e~~~~gIrVN~I~PG~i 197 (258) T 3afn_B 176 KNWVDFHTKDGVRFNIVSPGTV 197 (258) T ss_dssp HHHHHHHGGGTEEEEEEEECSB T ss_pred HHHHHHHCCCCEEEEEEECCCC T ss_conf 9999985525849999962869 No 47 >2kuq_A Fibroblast growth factor receptor substrate 3, LI residue peptide from ALK tyrosine...; chimera, SNT-2, PTB domain, HALK, structural genomics; NMR {Homo sapiens} PDB: 2yt2_A Probab=22.50 E-value=27 Score=12.58 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=4.5 Q ss_pred HHHHHHHHHHH Q ss_conf 88999899998 Q gi|254781110|r 229 AALKNALLLFL 239 (420) Q Consensus 229 ~~~~~a~~~~~ 239 (420) +..-+.+...+ T Consensus 95 eqIf~~Iq~~I 105 (153) T 2kuq_A 95 EEIFNLLQDLM 105 (153) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 48 >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Probab=22.27 E-value=27 Score=12.55 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=16.9 Q ss_pred HHHHHHHHHHCCCEEEEEEECCC Q ss_conf 89999999978987999995489 Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINAS 372 (420) Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~~ 372 (420) ++.++..+...||++.+|.-|.- T Consensus 183 tr~lA~e~~~~gIrVN~V~PG~i 205 (265) T 1h5q_A 183 VKGLAAEWASAGIRVNALSPGYV 205 (265) T ss_dssp HHHHHHHHGGGTEEEEEEEECSB T ss_pred HHHHHHHHCCCCCEEEEEECCCC T ss_conf 99999996301908999953878 No 49 >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} Probab=21.15 E-value=28 Score=12.41 Aligned_cols=11 Identities=9% Similarity=0.159 Sum_probs=6.7 Q ss_pred CCEEEEEEECC Q ss_conf 98799999548 Q gi|254781110|r 361 FIKIVTISINA 371 (420) Q Consensus 361 gi~i~tIgf~~ 371 (420) +|+|..|.-|. T Consensus 179 ~IrVN~I~PG~ 189 (259) T 3edm_A 179 KIRVNAVCPGM 189 (259) T ss_dssp TCEEEEEEECC T ss_pred CCEEEEEECCC T ss_conf 98899984187 Done!