HHSEARCH alignment of GI: 254781110 and SCOP domain: d1mf7a_

Alignment
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.51  E-value=7.7e-14  Score=105.68  Aligned_cols=179  Identities=16%  Similarity=0.185  Sum_probs=130.8

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      ..|+.|++|.|++|.                    ..++...+..+..+++.+.     .+..|++++.|++......+|
T Consensus         5 ~~DivfvlD~S~s~~--------------------~~~~~~~k~f~~~iv~~l~-----~~~~rv~vv~fs~~~~~~~~l   59 (194)
T d1mf7a_           5 DSDIAFLIDGSGSII--------------------PHDFRRMKEFVSTVMEQLK-----KSKTLFSLMQYSEEFRIHFTF   59 (194)
T ss_dssp             CEEEEEEEECCTTSC--------------------HHHHHHHHHHHHHHHHHHC-----CTTEEEEEEEESSSEEEEECH
T ss_pred             CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCC-----CCCCEEEEEEEECCCEEEEEC
T ss_conf             716999997989988--------------------7999999999999999718-----678369999972240257752


Q ss_pred             CC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             77--8488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r  270 SW--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN  347 (420)
Q Consensus       270 t~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~  347 (420)
                      +.  +..++.+.++.+.  ..+|+|....++.++.+.+.....             ...+..+|++|++|||..+.... 
T Consensus        60 ~~~~~~~~~~~~i~~i~--~~~~~t~~~~al~~~~~~~~~~~~-------------~~~~~~~kvvvliTDG~~~~~~~-  123 (194)
T d1mf7a_          60 KEFQNNPNPRSLVKPIT--QLLGRTHTATGIRKVVRELFNITN-------------GARKNAFKILVVITDGEKFGDPL-  123 (194)
T ss_dssp             HHHHHSCCHHHHHTTCC--CCCSCBCHHHHHHHHHHTTTSGGG-------------TCCTTSEEEEEEEESSCCBSCSS-
T ss_pred             CCCCCHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHC-------------CCCCCCCEEEEEEECCCCCCCCH-
T ss_conf             66577899999976455--532101577999999999875642-------------57889735999982689899805-


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             348999999997898799999548977---899999862189--827981798999999999998742
Q gi|254781110|r  348 VNTIKICDKAKENFIKIVTISINASPN---GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMV  410 (420)
Q Consensus       348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~---~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~  410 (420)
                       ........+|..||+||+||++....   ....|+.+|+.|  .++|.+++.++|.+..+.|.+.|-
T Consensus       124 -~~~~~~~~~~~~gv~i~~VGi~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~i~  190 (194)
T d1mf7a_         124 -GYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIF  190 (194)
T ss_dssp             -CGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHH
T ss_pred             -HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             -5999999999859905998057766652569999999659987719995999999999999988762


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit)
species: Human (Homo sapiens) [TaxId: 9606]