HHSEARCH alignment of GI: 254781110 and SCOP domain: d1pt6a_

Alignment
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.61  E-value=2.1e-14  Score=109.28  Aligned_cols=178  Identities=19%  Similarity=0.236  Sum_probs=128.3

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r  191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS  270 (420)
Q Consensus       191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt  270 (420)
                      .|+.|++|.|+||.                      .++..++.+..+++.+.   ..++..|++++.|++......+|+
T Consensus         2 ~DivfvlD~S~S~~----------------------~~~~~k~f~~~~i~~~~---i~~~~~rv~vv~fs~~~~~~~~l~   56 (192)
T d1pt6a_           2 LDIVIVLDGSNSIY----------------------PWDSVTAFLNDLLKRMD---IGPKQTQVGIVQYGENVTHEFNLN   56 (192)
T ss_dssp             EEEEEEEECCTTCC----------------------CHHHHHHHHHHHHTTSC---BSTTSBEEEEEEESSSEEEEECTT
T ss_pred             EEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHHC---CCCCCCEEEEEEEECCEEEEEECC
T ss_conf             48999997988877----------------------79999999999999825---488873799999841278997277


Q ss_pred             C--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             7--84889999998640467887653889999998613101233455433477677877666248996068677777653
Q gi|254781110|r  271 W--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNV  348 (420)
Q Consensus       271 ~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~  348 (420)
                      .  +...+...++.+.. ..+++++.+.++.++...+.....+             ..++.+|++|++|||..+.   +.
T Consensus        57 ~~~~~~~~~~~i~~~~~-~~g~~~~~~~al~~~~~~~~~~~~g-------------~R~~~~kviillTDG~~~d---~~  119 (192)
T d1pt6a_          57 KYSSTEEVLVAAKKIVQ-RGGRQTMTALGTDTARKEAFTEARG-------------ARRGVKKVMVIVTDGESHD---NH  119 (192)
T ss_dssp             TCSSHHHHHHHHHTCCC-CCCSSCCHHHHHHHHHHTTTSGGGT-------------CCTTCEEEEEEEESSCCSC---SH
T ss_pred             CCHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHCCCCC-------------CCCCCCEEEEEEECCCCCC---CH
T ss_conf             64046899998865554-4221101578987777763012358-------------9888615899996688776---30


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             48999999997898799999548977--------899999862189--827981798999999999998742
Q gi|254781110|r  349 NTIKICDKAKENFIKIVTISINASPN--------GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMV  410 (420)
Q Consensus       349 ~~~~~c~~~k~~gi~i~tIgf~~~~~--------~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~  410 (420)
                      .....++.+|+.||+||+||+|...+        ..+.|+..|+.|  .|+|.+++..+|.++++.|.+.|-
T Consensus       120 ~~~~~a~~lk~~gi~v~~igvg~~~~~~~~~~~~~~~~L~~IAs~p~~~~~f~v~d~~~L~~i~~~i~~~I~  191 (192)
T d1pt6a_         120 RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIF  191 (192)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHC
T ss_conf             269999999977996999997055554543431369999998669985508983899999999999988852


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha1-beta1
species: Human (Homo sapiens) [TaxId: 9606]