HHSEARCH alignment of GI: 254781110 and SCOP domain: d1q0pa_

Alignment

Probab=99.69  E-value=9.4e-16  Score=118.13  Aligned_cols=188  Identities=16%  Similarity=0.189  Sum_probs=134.5

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r  191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS  270 (420)
Q Consensus       191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt  270 (420)
                      +|+.|++|.|+||.                    ..+++.++.++..+++.+...   ....|++++.|++......+++
T Consensus         2 lDivfvlD~SgSm~--------------------~~~~~~~k~~~~~li~~l~~~---~~~~rv~lv~f~~~~~~~~~l~   58 (209)
T d1q0pa_           2 MNIYLVLDGSDSIG--------------------ASNFTGAKKSLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVS   58 (209)
T ss_dssp             EEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHHHHTT---TCCCEEEEEEESSSEEEEECTT
T ss_pred             CCEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEEECCC
T ss_conf             07799996889988--------------------599999999999999961047---8876799999658505886476


Q ss_pred             CCHH----HHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             7848----899999986404--6788765388999999861310123345543347767787766624899606867777
Q gi|254781110|r  271 WGTE----KVRQYVTRDMDS--LILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF  344 (420)
Q Consensus       271 ~~~~----~~~~~i~~~~~~--~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~  344 (420)
                      ....    .+.+.++.+...  ..+|+|++..||.++...+......          .....++.+|++|++|||..+.+
T Consensus        59 ~~~~~~~~~l~~~i~~i~~~~~~~~g~t~~~~al~~a~~~~~~~~~~----------~~~~~~~~~kvvvl~TDG~~~~~  128 (209)
T d1q0pa_          59 EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV----------PPEGWNRTRHVIILMTDGLHNMG  128 (209)
T ss_dssp             SGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSS----------CCTTGGGCEEEEEEEECSCCCSS
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC----------CCCCCCCCCEEEEEECCCCCCCC
T ss_conf             51166789999999972101366788854989999999999752224----------76566777518999757876678


Q ss_pred             CCCCHHHHH----------HHHHHHCCCEEEEEEECCCCCHHHHHHHHHCC---CCCEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf             765348999----------99999789879999954897789999986218---98279817989999999999987420
Q gi|254781110|r  345 KSNVNTIKI----------CDKAKENFIKIVTISINASPNGQRLLKTCVSS---PEYHYNVVNADSLIHVFQNISQLMVH  411 (420)
Q Consensus       345 ~~~~~~~~~----------c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~---~~~yf~a~~~~~L~~aF~~Ia~~I~~  411 (420)
                      .........          +..++..||.||+||+|.+.+. ..|+..|+.   +++||.+.+.++|.++|++|..+...
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~vgvg~~~~~-~~L~~iAs~~~~~~~~f~~~~~~~L~~~~~~ii~~~~s  207 (209)
T d1q0pa_         129 GDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQ-VNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQS  207 (209)
T ss_dssp             SCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCH-HHHHHHSCCCTTCCCEEETTC-----------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH-HHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf             98589999999854437899999866995598427766899-99999974989971599938999999999999885257


Q ss_pred             C
Q ss_conf             2
Q gi|254781110|r  412 R  412 (420)
Q Consensus       412 l  412 (420)
                      +
T Consensus       208 ~  208 (209)
T d1q0pa_         208 L  208 (209)
T ss_dssp             C
T ss_pred             C
T ss_conf             8

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]