HHSEARCH alignment of GI: 254781110 and SCOP domain: d1v7pc_

Alignment
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.58  E-value=1.4e-13  Score=103.99  Aligned_cols=179  Identities=20%  Similarity=0.200  Sum_probs=132.7

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             32012210223242233578766667534676653067889998999985104678765543022320487643124457
Q gi|254781110|r  191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS  270 (420)
Q Consensus       191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt  270 (420)
                      .|+.|++|.|+||.                      .++..++.+..++..+..   .++..|+++..|++......+|+
T Consensus         2 ~DivfvlD~S~Sv~----------------------~f~~~k~f~~~ii~~~~i---~~~~~rv~vv~fs~~~~~~~~l~   56 (193)
T d1v7pc_           2 IDVVVVCDESNSIY----------------------PWDAVKNFLEKFVQGLDI---GPTKTQVGLIQYANNPRVVFNLN   56 (193)
T ss_dssp             EEEEEEEECCTTCC----------------------CHHHHHHHHHHHHHTSCB---STTSEEEEEEEESSSEEEEECTT
T ss_pred             EEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHCCC---CCCCCEEEEEEEECCEEEEECCC
T ss_conf             79999998999873----------------------699999999999997255---88760799998520113550466


Q ss_pred             C--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             7--84889999998640467887653889999998613101233455433477677877666248996068677777653
Q gi|254781110|r  271 W--GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNV  348 (420)
Q Consensus       271 ~--~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~  348 (420)
                      .  +...+...++.+.. ..+|+|+.+.+|.++.+.+.....             ...++.+|++|++|||..+..   .
T Consensus        57 ~~~~~~~~~~~i~~~~~-~~g~~t~~~~AL~~a~~~~f~~~~-------------~~R~~~~kvvVllTDG~s~d~---~  119 (193)
T d1v7pc_          57 TYKTKEEMIVATSQTSQ-YGGDLTNTFGAIQYARKYAYSAAS-------------GGRRSATKVMVVVTDGESHDG---S  119 (193)
T ss_dssp             TCSSHHHHHHHHHHCCC-CCCSCCCHHHHHHHHHHHTTSGGG-------------TCCTTSEEEEEEEESSCCSCG---G
T ss_pred             CHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHCCCCCC-------------CCCCCCCEEEEEEECCCCCCC---C
T ss_conf             30367899999874443-225764268899888874146123-------------898887358999956876787---3


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf             48999999997898799999548977--------899999862189--8279817989999999999987420
Q gi|254781110|r  349 NTIKICDKAKENFIKIVTISINASPN--------GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVH  411 (420)
Q Consensus       349 ~~~~~c~~~k~~gi~i~tIgf~~~~~--------~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~  411 (420)
                      .....++.+|+.||++|+||++...+        ....|+..|+.|  .|+|.+.+..+|.+..+.|.+.|-+
T Consensus       120 ~~~~~~~~~~~~gv~v~~Igvg~~~~~~~~~~~~~~~~L~~Ias~p~~~~~f~v~d~~~L~~i~~~l~~~Ic~  192 (193)
T d1v7pc_         120 MLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFS  192 (193)
T ss_dssp             GHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf             6899999998689899999967754444444412599999986698710189818999999999999865131


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha2-beta1
species: Human (Homo sapiens) [TaxId: 9606]