HHSEARCH alignment of GI: 254781110 and SCOP domain: d1yvra2

Alignment
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=98.23  E-value=1.7e-05  Score=51.35  Aligned_cols=133  Identities=14%  Similarity=0.102  Sum_probs=74.5

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             20122102232422335787666675346766530678899989999851046787655430223204876431244577
Q gi|254781110|r  192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSW  271 (420)
Q Consensus       192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~  271 (420)
                      .+.+++|+||||.+...+.                +...++.+.-.....+.      ...+++++.|++..... +++.
T Consensus         7 ~~vl~iD~SGSM~~~~~~~----------------~~~~~~~a~~~~~~~~~------~~~~~~vv~F~~~~~~~-~~~~   63 (174)
T d1yvra2           7 RFLLAIDVSASMNQRVLGS----------------ILNASVVAAAMCMLVAR------TEKDSHMVAFSDEMLPC-PITV   63 (174)
T ss_dssp             CEEEEEECSGGGGSBSTTS----------------SCBHHHHHHHHHHHHHH------HCSSEEEEEESSSEECC-SCCT
T ss_pred             EEEEEEECCCCCCCCCCCC----------------CHHHHHHHHHHHHHHHC------CCCCEEEEEECCCCCCC-CCCC
T ss_conf             6999998860458966386----------------49999999999988505------68848999966774015-4673


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHH
Q ss_conf             84889999998640467887653889999998613101233455433477677877666248996068677777653489
Q gi|254781110|r  272 GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTI  351 (420)
Q Consensus       272 ~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~~  351 (420)
                      . ..+...+..+. ..+.|+|++..++.|+.....                      ..+++|++|||+++.+.... .+
T Consensus        64 ~-~~~~~~~~~~~-~~~~ggT~i~~al~~a~~~~~----------------------~~~~ivllTDg~~~~g~~~~-~~  118 (174)
T d1yvra2          64 N-MLLHEVVEKMS-DITMGSTDCALPMLWAQKTNT----------------------AADIFIVFTDCETNVEDVHP-AT  118 (174)
T ss_dssp             T-SCHHHHHHHHT-TCCCSCCCTTHHHHHHHHTTC----------------------CCSEEEEEECCCCCSSSCCH-HH
T ss_pred             C-CHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHC----------------------CCCEEEEEECCCCCCCCCCH-HH
T ss_conf             1-12999999763-256666308899999986301----------------------57879999678756788798-99


Q ss_pred             HHHHH--HHHCCCEEEEEEECCC
Q ss_conf             99999--9978987999995489
Q gi|254781110|r  352 KICDK--AKENFIKIVTISINAS  372 (420)
Q Consensus       352 ~~c~~--~k~~gi~i~tIgf~~~  372 (420)
                      .+-..  ..+.++++++|++...
T Consensus       119 ~l~~y~~~~~~~~~~~~i~l~~~  141 (174)
T d1yvra2         119 ALKQYREKMGIPAKLIVCAMTSN  141 (174)
T ss_dssp             HHHHHHHHHTCCCEEEEEECSSS
T ss_pred             HHHHHHHHCCCCCEEEEEECCCC
T ss_conf             99999987089948999987689


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]