RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781110|ref|YP_003065523.1| von Willebrand factor type A
[Candidatus Liberibacter asiaticus str. psy62]
(420 letters)
>2odp_A Complement C2; C3/C5 convertase, complement serine protease,
human complement system, glycoprotein, SP, VWFA,
hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A*
2i6q_A* 2i6s_A* (A:1-224)
Length = 224
Score = 59.2 bits (142), Expect = 8e-10
Identities = 34/241 (14%), Positives = 81/241 (33%), Gaps = 45/241 (18%)
Query: 182 RIEMGERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDS 241
+I++ + L++D S S+ K + L +D
Sbjct: 1 KIQIQRSGHLNLYLLLDASQSV--------------------SENDFLIFKESASLMVDR 40
Query: 242 IDLLSHVKEDVYMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILK------PTDST 295
I + +V + +I + + + + + V +++ K T++
Sbjct: 41 IFSF---EINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTY 97
Query: 296 PAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENN------NFKSNVN 349
A+ Y ++ + + Q ++ II LTDG++N ++
Sbjct: 98 AALNSVYLMMNNQMRLLGMETMAWQEIR-------HAIILLTDGKSNMGGSPKTAVDHIR 150
Query: 350 TIKICDKAKENFIKIVTISINASPNGQRLLK--TCVSSPEYHY-NVVNADSLIHVFQNIS 406
I ++ + +++ I I + R L E H + + +L VF+++
Sbjct: 151 EILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHML 210
Query: 407 Q 407
Sbjct: 211 D 211
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus,
CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A
{Streptococcus pneumoniae}
(A:221-279,A:318-447,A:506-585)
Length = 269
Score = 54.5 bits (130), Expect = 2e-08
Identities = 26/224 (11%), Positives = 58/224 (25%), Gaps = 47/224 (20%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
+++D S SM +K + A +D I + +
Sbjct: 9 ILLDNSNSMSNIR--------------NKNARRAERAGEATRSLIDKIT----SDSENRV 50
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYV---TRDMDSL-----ILKPTDSTP---AMKQAYQ 303
L+ Y + ++ + + + ++ +T A+ +A +
Sbjct: 51 ALVTYASTIDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADE 110
Query: 304 ILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIK 363
ILT +++ QK I +TDG S A +
Sbjct: 111 ILTQQARQN----------------SQKVIFHITDGVPTM--SYPINFNHATFAPSYQNQ 152
Query: 364 IVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQ 407
+ + LL ++ + +
Sbjct: 153 LNAFFSKSPNKDGILLSDFITQATSGEHTIVRGDGQSNSNTAKI 196
>3hrz_D Complement factor B; serine protease, glycosilated,
multi-domain, complement system, convertase, complement
alternate pathway, complement pathway; HET: NAG P6G;
2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* (D:199-457)
Length = 259
Score = 54.1 bits (129), Expect = 3e-08
Identities = 33/231 (14%), Positives = 72/231 (31%), Gaps = 51/231 (22%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
LV+D SGS+ + K L+ ++ +
Sbjct: 50 LVLDGSGSI--------------------GASDFTGAKKCLVNLIEKVASYG---VKPRY 86
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKP------TDSTPAMKQAYQILTSD 308
GL+ Y T + ++ S +VT+ ++ + + T++ A++ Y +++
Sbjct: 87 GLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWP 146
Query: 309 KKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNV----------NTIKICDKAK 358
+ II +TDG +N + K +
Sbjct: 147 DDVPPEGWNRT----------RHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPR 196
Query: 359 ENFIKIVTISINASPNGQRLLK-TCVSSPEYHY-NVVNADSLIHVFQNISQ 407
E+++ + + N + E H V + ++L VF +
Sbjct: 197 EDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMID 247
>1jey_A KU70; double-strand DNA break repair, non-homologous
END-joining, protein/nucleic acid complex, alpha/beta
domain, beta barrel; HET: DNA; 2.50A {Homo sapiens}
(A:1-252)
Length = 252
Score = 52.4 bits (124), Expect = 1e-07
Identities = 18/228 (7%), Positives = 57/228 (25%), Gaps = 28/228 (12%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
+VD S +M + + T + S + S + +
Sbjct: 40 FLVDASKAM-------------FESQSEDELTPFDMSIQCIQSVYISKIISS---DRDLL 83
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
++ Y T +KN +++ ++ ++ +Q +
Sbjct: 84 AVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSL 143
Query: 315 TNFFRQGVKI----PSLPFQKFIIFLTDGENN---NFKSNVNTIKICDKAKENFIKIVTI 367
+ + K I+ T+ +N + ++ I + +
Sbjct: 144 SEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLM 203
Query: 368 SINASPNGQRL-----LKTCVSSPEYHYNVVNADSLIHVFQNISQLMV 410
+ + + + + + L + + +
Sbjct: 204 HLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKET 251
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood
clotting; 1.80A {Homo sapiens} (A:)
Length = 202
Score = 51.9 bits (123), Expect = 2e-07
Identities = 18/215 (8%), Positives = 58/215 (26%), Gaps = 41/215 (19%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
++D S + + LK ++ ++ + + ++ V +
Sbjct: 18 FLLDGSSRL--------------------SEAEFEVLKAFVVDMMERLRVS---QKWVRV 54
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYV-TRDMDSLILKPTDSTPAMKQAYQILTSDKKRSF 313
++ Y I + + ++ +K + S R
Sbjct: 55 AVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPE 114
Query: 314 FTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASP 373
+ + L + + + N ++ K+ + ++ + I
Sbjct: 115 ---------------ASRIALLLMASQ-EPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHA 158
Query: 374 NGQRLLK-TCVSSPEYHYNVVNADSLIHVFQNISQ 407
N +++ + + + + D L I
Sbjct: 159 NLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVS 193
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain,
A domain, hydrolase; 1.80A {Homo sapiens} (A:)
Length = 223
Score = 50.3 bits (119), Expect = 4e-07
Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 51/231 (22%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
LV+D S S+ + K +L+ ++ +
Sbjct: 20 LVLDGSDSI--------------------GASNFTGAKKSLVNLIEKVASY---GVKPRY 56
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILK------PTDSTPAMKQAYQILTSD 308
GL+ Y T + ++ S +VT+ ++ + + T++ A++ Y +++
Sbjct: 57 GLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWP 116
Query: 309 KKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENN----------NFKSNVNTIKICDKAK 358
+ II +TDG +N + + K +
Sbjct: 117 D----------DVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPR 166
Query: 359 ENFIKIVTISINASPNGQRLLK-TCVSSPEYHY-NVVNADSLIHVFQNISQ 407
E+++ + + N + E H V + ++L VF +
Sbjct: 167 EDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMID 217
>1jey_B KU80; double-strand DNA break repair, non-homologous
END-joining, protein/nucleic acid complex, alpha/beta
domain, beta barrel; HET: DNA; 2.50A {Homo sapiens}
(B:1-236,B:463-505)
Length = 279
Score = 47.2 bits (111), Expect = 3e-06
Identities = 20/234 (8%), Positives = 48/234 (20%), Gaps = 52/234 (22%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
L +D+ +M ++ + K + +F+ +
Sbjct: 12 LCMDVGFTMSNSIPGIE--------------SPFEQAKKVITMFVQRQVFAE---NKDEI 54
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVT--RDMDSLILK-----------PTDSTPAMKQA 301
L+ + T N + D +L+ D A+ +
Sbjct: 55 ALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVS 114
Query: 302 YQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENF 361
++ + F TD + S I K+
Sbjct: 115 MDVIQHETIGKKFEKRHI--------------EIFTDLSSRF--SKSQLDIIIHSLKKCD 158
Query: 362 IKIVTISINASPNGQRLLKT------CVSSPEYHYNVVNADSLIHVFQNISQLM 409
I + + + + + +M
Sbjct: 159 ISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVM 212
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A
{Escherichia coli} (A:)
Length = 179
Score = 46.9 bits (110), Expect = 4e-06
Identities = 20/214 (9%), Positives = 58/214 (27%), Gaps = 44/214 (20%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
+ D S S+ + + + + + +
Sbjct: 7 FLFDGSMSL--------------------QPDEFQKILDFMKDVMKKCS-----NTSYQF 41
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
+ ++T + + S ++ +L T++ A+ + ++ +
Sbjct: 42 AAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARP 101
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPN 374
K +I +TDGE + + K +I + +
Sbjct: 102 D-------------ATKVLIIITDGEATD-----SGNIDAAKDIIRYIIGIGKHFQTKES 143
Query: 375 GQRLLK-TCVSSPEYHYNVVNADSLIHVFQNISQ 407
+ L K + E+ + + L + + +
Sbjct: 144 QETLHKFASKPASEFVKILDTFEKLKDLCTELQK 177
>3k6s_A Integrin alpha-X; hetero dimer, cell receptor, adhesion
molecule, calcium, cell adhesion, disulfide bond,
glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A
{Homo sapiens} PDB: 3k71_A* 3k72_A* (A:125-315)
Length = 191
Score = 45.3 bits (106), Expect = 1e-05
Identities = 25/218 (11%), Positives = 60/218 (27%), Gaps = 45/218 (20%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
++D SGS+ A + N + + +
Sbjct: 11 FLIDGSGSI--------------------SSRNFATMMNFVRAVISQFQ-----RPSTQF 45
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
L+ ++ + + + + T + A++ L +
Sbjct: 46 SLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARR 105
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPN 374
K +I +TDG+ +++ + A I I + +
Sbjct: 106 DAA-------------KILIVITDGKKEG--DSLDYKDVIPMADAAGIIRYAIGVGLAFQ 150
Query: 375 G---QRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQ 407
+ L S P E+ + V + D+L + + +
Sbjct: 151 NRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKE 188
>2b2x_A Integrin alpha-1; computational design, antibody-antigen
complex, immune system; 2.20A {Rattus norvegicus} (A:)
Length = 223
Score = 45.3 bits (106), Expect = 2e-05
Identities = 29/223 (13%), Positives = 70/223 (31%), Gaps = 50/223 (22%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
+V+D S S+ + A N LL +D + +
Sbjct: 27 IVLDGSNSI-------------------YPWESVIAFLNDLLKRMDIGP------KQTQV 61
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
G++ Y V E + + V + ++ + T +
Sbjct: 62 GIVQYGENVT--HEFNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEA-- 117
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPN 374
+ +K ++ +TDGE++ N ++ ++ I+ +I+I N
Sbjct: 118 --------RGARRGVKKVMVIVTDGESH---DNYRLKQVIQDCEDENIQRFSIAILGHYN 166
Query: 375 GQRLLK----------TCVSSPEYHYNVVNADSLIHVFQNISQ 407
L + ++ +NV + +L+ + + + +
Sbjct: 167 RGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGE 209
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} (A:)
Length = 194
Score = 43.1 bits (100), Expect = 6e-05
Identities = 25/218 (11%), Positives = 63/218 (28%), Gaps = 45/218 (20%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
++D SGS+ +K + ++ K
Sbjct: 10 FLIDGSGSI--------------------IPHDFRRMKEFVSTVME-----QLKKSKTLF 44
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
L+ Y+ + + +L T + +++ + L + +
Sbjct: 45 SLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITNGARK 104
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPN 374
K ++ +TDGE + + +A + I + +
Sbjct: 105 NA-------------FKILVVITDGEKFG--DPLGYEDVIPEADREGVIRYVIGVGDAFR 149
Query: 375 G---QRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQ 407
++ L T S P ++ + V N ++L + + +
Sbjct: 150 SEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLRE 187
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist,
cell adhesion, glycoprotein, toxin/cell adhesion
complex; HET: NAG; 1.90A {Homo sapiens} (C:)
Length = 200
Score = 42.7 bits (99), Expect = 8e-05
Identities = 31/224 (13%), Positives = 61/224 (27%), Gaps = 52/224 (23%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
+V D S S+ + + LD +
Sbjct: 11 VVCDESNSI-------------------YPWDAVKNFLEKFVQGLDIGP------TKTQV 45
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQY-VTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSF 313
GLI Y + K T T++ A++ A + S
Sbjct: 46 GLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGR 105
Query: 314 FTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASP 373
+ ++ +TDGE++ + D+ + I I++
Sbjct: 106 RSATK-------------VMVVVTDGESH---DGSMLKAVIDQCNHDNILRFGIAVLGYL 149
Query: 374 NGQ--------RLLKTCVSSP--EYHYNVVNADSLIHVFQNISQ 407
N + +K S P Y +NV + +L+ + +
Sbjct: 150 NRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGE 193
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens}
(A:1-214)
Length = 214
Score = 42.7 bits (99), Expect = 9e-05
Identities = 33/233 (14%), Positives = 72/233 (30%), Gaps = 51/233 (21%)
Query: 193 IELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDV 252
I LV+D S S+ + K L+ ++ +
Sbjct: 4 IYLVLDGSDSI--------------------GASNFTGAKKVLVNLIEKVASYG---VKP 40
Query: 253 YMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILK------PTDSTPAMKQAYQILT 306
GL+ Y T + ++ S +VT+ ++ + + T++ A++ Y +++
Sbjct: 41 RYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMS 100
Query: 307 SDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENN----------NFKSNVNTIKICDK 356
+ II +TDG +N + + K
Sbjct: 101 WPDDVP---PEGWNRTR-------HVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKN 150
Query: 357 AKENFIKIVTISINASPNGQRLLK-TCVSSPEYHY-NVVNADSLIHVFQNISQ 407
+E+++ + + N + E H V + + L VF +
Sbjct: 151 PREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMID 203
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON
willebrand factor A domain, beta- sheet, RNA binding
protein; 1.89A {Deinococcus radiodurans}
(A:53-64,A:359-535)
Length = 189
Score = 42.5 bits (99), Expect = 1e-04
Identities = 20/189 (10%), Positives = 43/189 (22%), Gaps = 47/189 (24%)
Query: 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLS 246
+ L +D+SGSM C D A
Sbjct: 14 PANTRHL-LALDVSGSMT---------------CGDVAGVPGLTPNMAAAAMSLIA---- 53
Query: 247 HVKEDVYMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILT 306
++ + +G+ + T + + + TD + A Q
Sbjct: 54 -LRTEPDALTMGFAEQFRPLGITPRDTLESAMQKAQSVSF---GGTDCAQPILWAAQERL 109
Query: 307 SDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVN-TIKICDKAKENFIKIV 365
+ TD E + + + + K++
Sbjct: 110 D----------------------VDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLI 147
Query: 366 TISINASPN 374
+ + A+
Sbjct: 148 VVGLTATEF 156
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A
{Homo sapiens} (A:)
Length = 213
Score = 42.3 bits (98), Expect = 1e-04
Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 50/223 (22%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
+V+D S S+ + A N LL +D + +
Sbjct: 12 IVLDGSNSI-------------------YPWDSVTAFLNDLLKRMDIGP------KQTQV 46
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
G++ Y V E + + V ++ + T +
Sbjct: 47 GIVQYGENVT--HEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARG 104
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPN 374
+K ++ +TDGE++ N K+ ++ I+ +I+I S N
Sbjct: 105 ARRGV----------KKVMVIVTDGESH---DNHRLKKVIQDCEDENIQRFSIAILGSYN 151
Query: 375 GQRLLK----------TCVSSPEYHYNVVNADSLIHVFQNISQ 407
L + ++ +NV + +L+ + + + +
Sbjct: 152 RGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGE 194
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa;
heat repeat, VON willebrand factor A, rossmann fold,
midas motif', RNA binding protein; 1.95A {Xenopus
laevis} (A:365-538)
Length = 174
Score = 42.2 bits (98), Expect = 1e-04
Identities = 23/189 (12%), Positives = 50/189 (26%), Gaps = 49/189 (25%)
Query: 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLS 246
+ L +D+S SM+ Q + + A A + +
Sbjct: 2 PTGKRFL-LAIDVSASMN----------------QRVLGSILNASVVAAAMCMLVA---- 40
Query: 247 HVKEDVYMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILT 306
+ + ++ ++ + V M + + TD M A + T
Sbjct: 41 --RTEKDSHMVAFSDEMLPCPITVNML---LHEVVEKMSDITMGSTDCALPMLWAQKTNT 95
Query: 307 SDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTI-KICDKAKENFIKIV 365
+ I TD E N + T K + K++
Sbjct: 96 A----------------------ADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLI 133
Query: 366 TISINASPN 374
++ ++
Sbjct: 134 VCAMTSNGF 142
>1atz_A VON willebrand factor; collagen-binding, hemostasis,
dinucleotide binding fold; 1.80A {Homo sapiens} (A:)
Length = 189
Score = 40.4 bits (93), Expect = 4e-04
Identities = 24/211 (11%), Positives = 61/211 (28%), Gaps = 41/211 (19%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
L++D S S + +K+ F+ ++ +
Sbjct: 10 LLLDGSSSF--------------------PASYFDEMKSFAKAFISKANIG---PRLTQV 46
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
++ Y + ++ + EK D+ P+ A+ A + LTS+ +
Sbjct: 47 SVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGARP 106
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPN 374
K ++ L + + + D A+ N + + I I +
Sbjct: 107 -------------GASKAVVILVTDVSVD-----SVDAAADAARSNRVTVFPIGIGDRYD 148
Query: 375 GQRLLKTCVSSPEYHYNVVNADSLIHVFQNI 405
+L + + + + + +
Sbjct: 149 AAQLRILAGPAGDSNVVKLQRIEDLPTMVTL 179
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion;
1.65A {Homo sapiens} (A:)
Length = 198
Score = 39.7 bits (91), Expect = 6e-04
Identities = 24/218 (11%), Positives = 59/218 (27%), Gaps = 45/218 (20%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
++D SGS+ A + N + + +
Sbjct: 14 FLIDGSGSI--------------------SSRNFATMMNFVRAVISQFQ-----RPSTQF 48
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
L+ ++ + + + + T + A++ L +
Sbjct: 49 SLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARR 108
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPN 374
K +I +TDG+ +++ + A I I + +
Sbjct: 109 -------------DAAKILIVITDGKKEG--DSLDYKDVIPMADAAGIIRYAIGVGLAFQ 153
Query: 375 G---QRLLK--TCVSSPEYHYNVVNADSLIHVFQNISQ 407
+ L S E+ + V + D+L + + +
Sbjct: 154 NRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKE 191
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation,
cell adhesion, cleavage on PAIR of basic residues,
disease mutation, disulfide bond; HET: NAG; 1.90A {Homo
sapiens} (A:)
Length = 184
Score = 36.5 bits (83), Expect = 0.006
Identities = 18/213 (8%), Positives = 51/213 (23%), Gaps = 47/213 (22%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
V++ S + K + + +D+ + +++
Sbjct: 7 FVLEGSDKI--------------------GEADFNRSKEFMEEVIQRMDVGQ---DSIHV 43
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
++ Y+ V S K + + F
Sbjct: 44 TVLQYSYMVTVEYPFSEAQSKGDILQRVREIRYQ-------GGNRTNTGLALRYLSDHSF 96
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPN 374
+ P + +T ++ K I++V I + + N
Sbjct: 97 LVSQGDREQAP-----NLVYMVTGNPASD----------EIKRLPGDIQVVPIGVGPNAN 141
Query: 375 GQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQ 407
+ L+ + + ++L ++
Sbjct: 142 -VQELERIGWPNAP-ILIQDFETLPREAPDLVL 172
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane
protein; 1.50A {Homo sapiens} (X:)
Length = 182
Score = 34.9 bits (79), Expect = 0.020
Identities = 24/214 (11%), Positives = 55/214 (25%), Gaps = 46/214 (21%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
V+D SGS+ + L + ++ +
Sbjct: 11 FVLDKSGSV--------------------ANNWIEIYNFVQQLAERFVS------PEMRL 44
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
I ++++ + + K+ + + + T +K A + +
Sbjct: 45 SFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLK-- 102
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPN 374
II LTDG+ + K ++ + + +
Sbjct: 103 --------------TSSIIIALTDGKLDG-LVPSYAEKEAKISRSLGASVYCVGV--LDF 145
Query: 375 GQRLLKTCVSSPE-YHYNVVNADSLIHVFQNISQ 407
Q L+ S E +L + +I
Sbjct: 146 EQAQLERIADSKEQVFPVKGGFQALKGIINSILA 179
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics,
PSI, protein structure initiative; 2.25A {Escherichia
coli O157} (A:)
Length = 420
Score = 28.9 bits (64), Expect = 1.3
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 8/64 (12%)
Query: 56 ANNAAILAGASKMVSNLSRLGDRFESISNH--------AKRALIDDAKRFIKNHIKESLS 107
++ I NL + IS + L + I + I + L
Sbjct: 353 WPHSRIKNSVETXXVNLQGVDIPLGXISQYLPKQFERIQSGELSAIPHQLIXDKIYDVLR 412
Query: 108 GYSA 111
Y
Sbjct: 413 AYRY 416
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth
factor, hormone/growth factor complex; HET: 1PE; 2.20A
{Homo sapiens} (A:)
Length = 273
Score = 28.8 bits (64), Expect = 1.4
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 349 NTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQL 408
N +K K N K I++ P L C S + L+ F NIS+
Sbjct: 35 NNVKDVTKLVANLPKDYXITLKYVPGXDVLPSHCWISEXVVQLSDSLTDLLDKFSNISEG 94
Query: 409 MVHRKYSVILK 419
+ + YS+I K
Sbjct: 95 LSN--YSIIDK 103
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase,
enoyl reductase, ketoacyl synthase, ketoacyl reductase;
3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*
(A:351-401,A:517-530,A:614-906)
Length = 358
Score = 28.6 bits (62), Expect = 1.4
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 267 IEPSWGTEKVRQYVTRDMDSLILKPTDSTPAM 298
IEP++ K R Y +R + + K +
Sbjct: 37 IEPAFDPLKARVYDSRKFEHYV-KQMAEGGFL 67
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas,
admidas, membrane, integrin, titration, rossman fold,
cell adhesion, transmembrane; NMR {Mus musculus} (A:)
Length = 212
Score = 27.6 bits (60), Expect = 3.0
Identities = 19/220 (8%), Positives = 59/220 (26%), Gaps = 46/220 (20%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
++ LSGS + ++ ++ L +++ E
Sbjct: 8 FLMGLSGSA---------------------QGHLSNVQTLGSDLLKALN------EISRS 40
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSL-ILKPTDSTPAMKQAYQILTSDKKRSF 313
G IG+ + V + R++ + + A +
Sbjct: 41 GRIGFGSIVNMTFQHILKLTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIG 100
Query: 314 FTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASP 373
+ N +F++ +TD + + + T+ + + +
Sbjct: 101 WRN------------GTRFLVLVTDNDFHL--AKDKTLGTRQNTSDGRCHLDDGMYRSRG 146
Query: 374 NGQ----RLLKTCVSSPEYHYNVVNADSLIHVFQNISQLM 409
L + ++ V ++ ++ ++ +
Sbjct: 147 EPDYQSVVQLASKLAENNIQPIFVVPSRMVKTYEKLTTFI 186
>2b4l_A Glycine betaine-binding protein; substrate-binding protein,
closed liganded, ABC-transporter, compatible solutes,
transport protein; 2.00A {Bacillus subtilis} PDB:
2b4m_A* 3chg_D (A:1-87,A:247-268)
Length = 109
Score = 26.6 bits (59), Expect = 5.7
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 17/97 (17%)
Query: 266 NIEPSWGTEKVRQYVTR--DMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVK 323
I+P G + + D++ L S+ AM + KK T +
Sbjct: 16 GIDPGSGIMSLTDKAMKDYDLNDWTLISA-SSAAMTATLKKSYDRKKPIIITGW------ 68
Query: 324 IPSLPFQKF-IIFLTDGEN-------NNFKSNVNTIK 352
P F ++ + +L D + + NVN+I+
Sbjct: 69 TPHWMFSRYKLKYLDDPKQVKMGLVVPQYMKNVNSIE 105
>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop,
hydrolase; 2.10A {Thermus thermophilus HB27} PDB: 1wgz_A
(A:167-509)
Length = 343
Score = 26.4 bits (57), Expect = 7.0
Identities = 11/133 (8%), Positives = 32/133 (24%), Gaps = 3/133 (2%)
Query: 125 SRISMTHMANNRLDSSNNTIFYNMDVMTSYDYRLQFIEHLLNQRYNQKIVSFIPALLRIE 184
RI+ + + T+ + + + +
Sbjct: 90 VRITTRYYEDFFNAGIFGTLHEMGHALYEQGLPKEHWGTPRGDAVSLGVHESQSRTWENL 149
Query: 185 MGERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDL 244
+G F + ED + A + ++ A + L +
Sbjct: 150 VGRSLGFWERFFPRAREVFASLGDVSLEDFHFAVNAVEPSLIRVEADEVTYNLHILVRL- 208
Query: 245 LSHVKEDVYMGLI 257
++ ++ G +
Sbjct: 209 --ELELALFRGEL 219
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel,
glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB:
2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
(A:1-42,A:275-377)
Length = 145
Score = 26.4 bits (58), Expect = 7.1
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 58 NAAILAGASKMVSNLSRLGDRFESISNHAKRALIDD 93
AI NL + GDRF +S+ + + +++D
Sbjct: 3 QQAIGDALGITARNLKKFGDRFPHVSDGSNKYVLND 38
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} (A:)
Length = 82
Score = 25.7 bits (56), Expect = 9.7
Identities = 6/49 (12%), Positives = 16/49 (32%)
Query: 275 KVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVK 323
++ + + +AY++L+ KKR + +
Sbjct: 33 LALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPSS 81
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.135 0.383
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,942,654
Number of extensions: 126795
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 47
Length of query: 420
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 329
Effective length of database: 1,879,794
Effective search space: 618452226
Effective search space used: 618452226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)