HHsearch alignment for GI: 254781111 and conserved domain: pfam00348

>pfam00348 polyprenyl_synt Polyprenyl synthetase.
Probab=100.00  E-value=0  Score=370.06  Aligned_cols=195  Identities=40%  Similarity=0.605  Sum_probs=172.7

Q ss_pred             HHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             999998750-5860079999999999617882222402468888999998647765445322344556654324345201
Q gi|254781111|r   39 LLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAI  117 (237)
Q Consensus        39 l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AI  117 (237)
T Consensus         1 l~~am~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEllH~aSLIHDDI--~D~s~~RRG~pt~h~~~G~~~Ai   78 (260)
T pfam00348         1 LLAAMLYYLLAGGKRIRPLLVVLAARALGVEPETLLYLACAIEMIHTASLVHDDL--MDNSDLRRGKPTCHKKFGEAGAI   78 (260)
T ss_pred             CHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCHHHCCHHHHH
T ss_conf             9788998871893408999999999982998889999999999999999995332--46998779998602231117899


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3322223347999973102341267888887653222356641133222100--00003679999999863489999999
Q gi|254781111|r  118 IAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD--EFIDETQVFMIQKMKTGALMCFACES  195 (237)
Q Consensus       118 l~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~  195 (237)
T Consensus        79 l~GD~L~~~a~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~g~~-gQ~~d~~~~~~~~s~~~y~~~~~~KTa~Lf~~~~~~  156 (260)
T pfam00348        79 LAGDALLSRAFQLLALLGHVRP-EPKYILISELANAVGAQGEV-GQLMDLETEGKDITLEEYLRIVSYKTAALFYASVQL  156 (260)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9758999999999986579983-99999999999999999999-999987567889999999999999759999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCC
Q ss_conf             999759888999999999999849999986765344320---679
Q gi|254781111|r  196 GAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL---PKK  237 (237)
Q Consensus       196 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~k~  237 (237)
T Consensus       157 gailag~~~~~~~~l~~~g~~lGiaFQi~DDiLD~~gd~~~~GK~  201 (260)
T pfam00348       157 GAIVAGADEEDEKDLYDFGRDLGLAFQIQDDILDLTGDTEELGKP  201 (260)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC
T ss_conf             999819999999999999987368999899764144898770999