HHsearch alignment for GI: 254781111 and conserved domain: pfam00348
>pfam00348 polyprenyl_synt Polyprenyl synthetase.
Probab=100.00 E-value=0 Score=370.06 Aligned_cols=195 Identities=40% Similarity=0.605 Sum_probs=172.7
Q ss_pred HHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 999998750-5860079999999999617882222402468888999998647765445322344556654324345201
Q gi|254781111|r 39 LLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAI 117 (237)
Q Consensus 39 l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AI 117 (237)
T Consensus 1 l~~am~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEllH~aSLIHDDI--~D~s~~RRG~pt~h~~~G~~~Ai 78 (260)
T pfam00348 1 LLAAMLYYLLAGGKRIRPLLVVLAARALGVEPETLLYLACAIEMIHTASLVHDDL--MDNSDLRRGKPTCHKKFGEAGAI 78 (260)
T ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCHHHCCHHHHH
T ss_conf 9788998871893408999999999982998889999999999999999995332--46998779998602231117899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3322223347999973102341267888887653222356641133222100--00003679999999863489999999
Q gi|254781111|r 118 IAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD--EFIDETQVFMIQKMKTGALMCFACES 195 (237)
Q Consensus 118 l~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ 195 (237)
T Consensus 79 l~GD~L~~~a~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~g~~-gQ~~d~~~~~~~~s~~~y~~~~~~KTa~Lf~~~~~~ 156 (260)
T pfam00348 79 LAGDALLSRAFQLLALLGHVRP-EPKYILISELANAVGAQGEV-GQLMDLETEGKDITLEEYLRIVSYKTAALFYASVQL 156 (260)
T ss_pred HHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9758999999999986579983-99999999999999999999-999987567889999999999999759999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCC
Q ss_conf 999759888999999999999849999986765344320---679
Q gi|254781111|r 196 GAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL---PKK 237 (237)
Q Consensus 196 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~k~ 237 (237)
T Consensus 157 gailag~~~~~~~~l~~~g~~lGiaFQi~DDiLD~~gd~~~~GK~ 201 (260)
T pfam00348 157 GAIVAGADEEDEKDLYDFGRDLGLAFQIQDDILDLTGDTEELGKP 201 (260)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC
T ss_conf 999819999999999999987368999899764144898770999