HHsearch results for GI: 254781111 and protein with PDBid: 1rtr_A

Probab=100.00  E-value=0  Score=361.87  Aligned_cols=218  Identities=41%  Similarity=0.606  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999999999997675302457157999998750-58600799999999996178822224024688889999986
Q gi|254781111|r   10 QENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLI   88 (237)
Q Consensus        10 ~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLi   88 (237)
                      .+..++|++.|+..+.+      ...++.+.++++|.+ .||||+||.|++++++++|++.+.++++|+++|++|+||||
T Consensus         7 ~~~~~~i~~~l~~~~~~------~~~~~~l~~~~~y~l~~GGKr~Rp~L~l~~~~~~~~~~~~~~~~A~aiEllH~asLI   80 (301)
T 1rtr_A            7 NKLIDEVNNELSVAINK------SVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLI   80 (301)
T ss_dssp             HHHHHHHHHHHHTSSCC------CSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999998611------358878999999887399747869999999988499758899999999999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             47765445322344556654324345201332222334799997310234126788888765322235664113322210
Q gi|254781111|r   89 HDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQ  168 (237)
Q Consensus        89 hDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~  168 (237)
                      ||||+++|+++.|||+||+|.+||++.||++||+|++.+|++++....... .........+..+.+..+++.||.+|+.
T Consensus        81 hDDI~D~d~~~~RRg~~~~~~~~g~~~ail~gd~l~~~a~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~GQ~lDl~  159 (301)
T 1rtr_A           81 HDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTD-EVKIKVLQRLSIASGHVGMVGGQMLDMQ  159 (301)
T ss_dssp             HHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCH-HHHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             727733587742245654788752131265377178899999985343027-8999999999998659999876999998


Q ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00--0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  169 DE--FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       169 ~~--~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      ..  ..+++.|..|+++|||+||.+|+.+|+++++++++..+.+.+||.++|++|||+||++|++||.
T Consensus       160 ~~~~~~~~~~y~~i~~~KT~~l~~~~~~~ga~l~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~  227 (301)
T 1rtr_A          160 SEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE  227 (301)
T ss_dssp             TTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCH
T ss_conf             24899999999999999999999999999998715737779999999987221012230887734888