HHsearch results for GI: 254781111 and protein with PDBid: 1uby_A

>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00  E-value=0  Score=344.17  Aligned_cols=192  Identities=26%  Similarity=0.264  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-------CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5799999875058600799999999996178822-------224024688889999986477654453223445566543
Q gi|254781111|r   37 DRLLSAIRYALLGGKKIRSFLVTECASLFNVNHL-------TALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHI  109 (237)
Q Consensus        37 ~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~-------~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~  109 (237)
                      ..+.++++|.+.||||+||+++++++++++++..       .++++|++||++|++|||||||  ||+|++|||+||+|+
T Consensus        57 ~~l~~~l~y~~~GGKrlRp~l~~~~~~~~~~~~~~~~~~~~~a~~~a~aiEliH~asLvhDDI--~D~s~~RRG~pt~h~  134 (367)
T 1uby_A           57 ARLKEVLQYNAPGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDI--MDQSLTRRGQLCWYK  134 (367)
T ss_dssp             HHHHHHHHHHSSSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECGGG
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCC
T ss_conf             999999846568863266999999999857997666678999999999999999999998264--407887789833101


Q ss_pred             CCCCCCCHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH--------HHHHHHHHH
Q ss_conf             2434520133222233479-9997310234126788888765322235664113322210000--------003679999
Q gi|254781111|r  110 QYDEVTAIIAGNGLLTYAF-EIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF--------IDETQVFMI  180 (237)
Q Consensus       110 ~~G~~~AIl~Gd~l~~~a~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~--------~~~~~y~~i  180 (237)
                      +||++.||+.||+|+..++ .++......  .....+++..++++.  ..++.||.+|+.+..        .+++.|++|
T Consensus       135 ~~g~~~ail~gd~ll~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~t~~~y~~i  210 (367)
T 1uby_A          135 KEGVGLDAINDSFLLESSVYRVLKKYCRQ--RPYYVHLLELFLQTA--YQTELGQMLDLITAPVSKVDLSHFSEERYKAI  210 (367)
T ss_dssp             STTTTTHHHHHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHH--HHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHH
T ss_pred             CCHHHHHHHHCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf             12043888711348999999999872546--558999999999988--88899999999731244445432789999999


Q ss_pred             HHHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99986348--9999999999759888999999999999849999986765344320
Q gi|254781111|r  181 QKMKTGAL--MCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       181 ~~~KTa~l--f~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      +++|||.|  |..++..++++++.+++..+.+.+||.++|++|||+||++|++||.
T Consensus       211 i~~KTa~ls~~~~~~~~~~~~g~~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~  266 (367)
T 1uby_A          211 VKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDP  266 (367)
T ss_dssp             HHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             99988888889999987332222203778777655300057677314676602896