HHsearch results for GI: 254781111 and protein with PDBid: 1uby_A
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=0 Score=344.17 Aligned_cols=192 Identities=26% Similarity=0.264 Sum_probs=160.0
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-------CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5799999875058600799999999996178822-------224024688889999986477654453223445566543
Q gi|254781111|r 37 DRLLSAIRYALLGGKKIRSFLVTECASLFNVNHL-------TALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHI 109 (237)
Q Consensus 37 ~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~-------~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~ 109 (237)
..+.++++|.+.||||+||+++++++++++++.. .++++|++||++|++||||||| ||+|++|||+||+|+
T Consensus 57 ~~l~~~l~y~~~GGKrlRp~l~~~~~~~~~~~~~~~~~~~~~a~~~a~aiEliH~asLvhDDI--~D~s~~RRG~pt~h~ 134 (367)
T 1uby_A 57 ARLKEVLQYNAPGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDI--MDQSLTRRGQLCWYK 134 (367)
T ss_dssp HHHHHHHHHHSSSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECGGG
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCC
T ss_conf 999999846568863266999999999857997666678999999999999999999998264--407887789833101
Q ss_pred CCCCCCCHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH--------HHHHHHHHH
Q ss_conf 2434520133222233479-9997310234126788888765322235664113322210000--------003679999
Q gi|254781111|r 110 QYDEVTAIIAGNGLLTYAF-EIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF--------IDETQVFMI 180 (237)
Q Consensus 110 ~~G~~~AIl~Gd~l~~~a~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~--------~~~~~y~~i 180 (237)
+||++.||+.||+|+..++ .++...... .....+++..++++. ..++.||.+|+.+.. .+++.|++|
T Consensus 135 ~~g~~~ail~gd~ll~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~t~~~y~~i 210 (367)
T 1uby_A 135 KEGVGLDAINDSFLLESSVYRVLKKYCRQ--RPYYVHLLELFLQTA--YQTELGQMLDLITAPVSKVDLSHFSEERYKAI 210 (367)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHH--HHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHH
T ss_pred CCHHHHHHHHCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 12043888711348999999999872546--558999999999988--88899999999731244445432789999999
Q ss_pred HHHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986348--9999999999759888999999999999849999986765344320
Q gi|254781111|r 181 QKMKTGAL--MCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 181 ~~~KTa~l--f~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
+++|||.| |..++..++++++.+++..+.+.+||.++|++|||+||++|++||.
T Consensus 211 i~~KTa~ls~~~~~~~~~~~~g~~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~ 266 (367)
T 1uby_A 211 VKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDP 266 (367)
T ss_dssp HHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 99988888889999987332222203778777655300057677314676602896